View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9334-LTR4-TNT-insertion-7 (Length: 289)
Name: F9334-LTR4-TNT-insertion-7
Description: F9334-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9334-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 34594182 - 34593913
Alignment:
| Q |
10 |
acataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaaggaatc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594182 |
acataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaaggaatc |
34594083 |
T |
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| Q |
110 |
aatggaaaaaacagaaactcactatattgatatgtattgttcaattactttgcttcattttccatattgtgatcaaaattattttactttctccctagca |
209 |
Q |
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| T |
34594082 |
aatggaaaaaacagaaactcactatattgatatgtattgttcaattactttgcttcattttccatattgtgatcaaaattattttactttctccctagca |
34593983 |
T |
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| Q |
210 |
tgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaatta |
279 |
Q |
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| T |
34593982 |
tgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaatta |
34593913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 34578478 - 34578391
Alignment:
| Q |
14 |
aggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt |
101 |
Q |
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| T |
34578478 |
aggggatgggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattggaagaggt |
34578391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 34578196 - 34578123
Alignment:
| Q |
206 |
agcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaatta |
279 |
Q |
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| T |
34578196 |
agcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaatta |
34578123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 32601134 - 32601041
Alignment:
| Q |
10 |
acataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa |
103 |
Q |
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| T |
32601134 |
acataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaa |
32601041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 32590663 - 32590570
Alignment:
| Q |
10 |
acataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa |
103 |
Q |
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| T |
32590663 |
acataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaa |
32590570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 32590442 - 32590363
Alignment:
| Q |
200 |
ctccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaatta |
279 |
Q |
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|||||||| |||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32590442 |
ctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaatta |
32590363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 32600885 - 32600811
Alignment:
| Q |
205 |
tagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaatta |
279 |
Q |
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| T |
32600885 |
tagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaatta |
32600811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 24883380 - 24883439
Alignment:
| Q |
47 |
agtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaagga |
106 |
Q |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggtgagga |
24883439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 24883552 - 24883595
Alignment:
| Q |
233 |
aataaatgggcatcgtatgctggacctggaggatggaatggtaa |
276 |
Q |
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| T |
24883552 |
aataaatgggcttcttacgctggacctggaggatggaatggtaa |
24883595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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