View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9335-LTR4-TNT-insertion-1 (Length: 496)
Name: F9335-LTR4-TNT-insertion-1
Description: F9335-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9335-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Complemental strand, 7666206 - 7665727
Alignment:
| Q |
8 |
cttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccacaagataatggcaagtcagtaataaaatccata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666206 |
cttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccacaagataatggcaagtcagtaataaaatccata |
7666107 |
T |
|
| Q |
108 |
gtaacatcttcccatacctgagtgggtattggcagaggctgcaacaaccctgctggcagtgtagtcatatgtttagcctgctgacagatcagacattctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666106 |
gtaacatcttcccatacctgagtgggtattggcagaggctgcaacaaccctgctggcagtgtagtcatatgtttagcctgctgacagatcagacattctg |
7666007 |
T |
|
| Q |
208 |
tgatgaacttgtgaaccgccgtcttcatatttggccaataaaattcagcacttattcgtgccatagtcctagtaatgcctgcatgccctccaatcggtga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666006 |
tgatgaacttgtgaaccgccgtcttcatatttggccaataaaattcagcacttattcgtgccatagtcctagtaatgcctgcatgccctccaatcggtga |
7665907 |
T |
|
| Q |
308 |
agcatgaaactcttgcaacacttgttggattaatgaactatccaccggcaaaactagtttgttcttccagtataataagccttctttcactgtgtagtta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7665906 |
agcatgaaactcttgcaacacttgttggattaatgaactatccaccggcaaaactagtttgttcttccagtataataagccttctttcactgtgtagtta |
7665807 |
T |
|
| Q |
408 |
ctgtcagtgactgtattattgaggcattgttgtacaatagtttgtaagtgatcattctttgcaagttcagctttcaattg |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7665806 |
ctgtcagtgactgtattattgaggcattgttgtacaatagtttgtaagtgatcattctttgcaagttcagctttcaattg |
7665727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 9620601 - 9620719
Alignment:
| Q |
9 |
ttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccacaagataatggcaagtcagtaataaaatccatag |
108 |
Q |
| |
|
||||| |||||||||||||| || ||| ||| ||||| || || || | ||| | ||||| ||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
9620601 |
ttcaagggcatgaaatgagcatatttactcagcctatctacgacgaccataataacagtaaaaccaaaagatagtggcaatccagtaataaaatccatag |
9620700 |
T |
|
| Q |
109 |
taacatcttcccatacctg |
127 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
9620701 |
ttacatcatcccatacctg |
9620719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 31284569 - 31284451
Alignment:
| Q |
9 |
ttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccacaagataatggcaagtcagtaataaaatccatag |
108 |
Q |
| |
|
||||| |||||||||||||| || ||| ||| ||||| || || || | ||| | ||||| ||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
31284569 |
ttcaagggcatgaaatgagcatatttactcagcctatctacgacgaccataataacagtaaaaccaaaagatagtggcaatccagtaataaaatccatag |
31284470 |
T |
|
| Q |
109 |
taacatcttcccatacctg |
127 |
Q |
| |
|
| ||||| || |||||||| |
|
|
| T |
31284469 |
ttacatcatcacatacctg |
31284451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 307 times since January 2019
Visitors: 965