View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9335-LTR4-TNT-insertion-11 (Length: 305)
Name: F9335-LTR4-TNT-insertion-11
Description: F9335-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9335-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 8127940 - 8127655
Alignment:
| Q |
10 |
aagaacctgaacttgctttgcaagtaattgattgatgcgctaacataatggtgatgataaatagacttggattcataactctaatgatggtttactctat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8127940 |
aagaacctgaacttgctttgcaagtaattgattgatgcgctaacataatggtgatgataaatagacttggattcataactctaatgatggtttactctat |
8127841 |
T |
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| Q |
110 |
caaagagacttaaataaaaggatcattttttgttttgttgaagaagggcttaaataaaaggatcgttacttgcttggagaatgttaaataaaaggatccc |
209 |
Q |
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| T |
8127840 |
caaagagacttaaataaaaggatcattttttgttttgttgaagaagggcttaaataaaaggatcgttacttgcttggagaatgttaaataaaaggatccc |
8127741 |
T |
|
| Q |
210 |
aaccaaggacaatcttattcatcgttgagtggtgccatctggttccttgttgttgccgagagggtgtggaaaggcagaaactatta |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8127740 |
aaccaaggacaatcttattcatcgttgagtggtgccatctggttccttgttgttgccgagagggtgtggaaaggcagaaactatta |
8127655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 13780022 - 13779962
Alignment:
| Q |
183 |
ttggagaatgttaaataaaaggatcccaaccaaggacaatcttattcatcgttgagtggtg |
243 |
Q |
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| T |
13780022 |
ttggagaattttaaataaaaggatcccaaccaatgataatcttattcatcgtgaagtggtg |
13779962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 27787150 - 27787102
Alignment:
| Q |
10 |
aagaacctgaacttgctttgcaagtaattgattgatgcgctaacataat |
58 |
Q |
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||||||| ||||||| |||||| ||||||||||||||||||||||||| |
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| T |
27787150 |
aagaaccctaacttgcattgcaaataattgattgatgcgctaacataat |
27787102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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