View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9335-LTR4-TNT-insertion-4 (Length: 426)
Name: F9335-LTR4-TNT-insertion-4
Description: F9335-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9335-LTR4-TNT-insertion-4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 3652736 - 3652327
Alignment:
| Q |
7 |
aagaagatttaaaatttcacttgnnnnnnntggctgagtttttggatcgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaa |
106 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652736 |
aagaagatttaaaatttcacttgaaaaaaatggctgagtttttggatcgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaa |
3652637 |
T |
|
| Q |
107 |
gttgtgtagttttgagaaaatgaaggggttggagataaataatacaggaacatttggaaggaactttgagaataagttcttgtttagaaaaggtgaagtt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652636 |
gttgtgtagttttgagaaaatgaaggggttggagataaataatacaggaacatttggaaggaactttgagaataagttcttgtttagaaaaggtgaagtt |
3652537 |
T |
|
| Q |
207 |
ggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652536 |
ggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaaat |
3652437 |
T |
|
| Q |
307 |
agggttgctacaactcctatgtttctctcctaaactatgaagtcaacttatcactctatgaaataatgttgattaatagttaatcaagaatcaaaatata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652436 |
agggttgctacaactcctatgtttctctcctaaactatgaagtcaacttatcactctatgaaataatgttgattaatagttaatcaagaatcaaaatata |
3652337 |
T |
|
| Q |
407 |
tatacaattg |
416 |
Q |
| |
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|||||||||| |
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| T |
3652336 |
tatacaattg |
3652327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 4506244 - 4506131
Alignment:
| Q |
168 |
aactttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaag |
267 |
Q |
| |
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||||||||||| |||||||| |||||||| | ||||| || ||||||| ||||||||||| |||| ||||| |||||| | ||||| |||| |||| |
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| T |
4506244 |
aactttgagaacaagttcttctttagaaaggcagaagtaggagattggataaattatctttctccttgaatggaagaaaaactatccaaaatcatagaag |
4506145 |
T |
|
| Q |
268 |
agaagttaggtgga |
281 |
Q |
| |
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| |||||| ||||| |
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| T |
4506144 |
aaaagttaagtgga |
4506131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 15751676 - 15751740
Alignment:
| Q |
210 |
gattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagtt |
274 |
Q |
| |
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||||||| ||| || ||||| ||||||||||| |||||| | ||||| |||||||||||||||| |
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|
| T |
15751676 |
gattggattaactacctttctccttcaatggtagaaaaactatccaaaatcattgaagagaagtt |
15751740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 285
Target Start/End: Complemental strand, 1626544 - 1626301
Alignment:
| Q |
42 |
gagtttttggatcgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttggaga |
141 |
Q |
| |
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|||||||||| | |||||||||| ||||| |||||| | |||||||||||||||||||| || || ||||| ||||| || ||||| || ||||| |
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| T |
1626544 |
gagtttttgggttgtccttttactcaagaggaagaaagtaatggtgtgattgaaaatataatcaatttatgtagctttgaaaagatgaaaggattggaag |
1626445 |
T |
|
| Q |
142 |
taaataatacaggaacatttggaaggaactttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggt |
241 |
Q |
| |
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|||||| | ||| || |||| || | ||| || |||| ||| ||| |||| || ||| | || ||||||| |||||||||||| ||||||||||| |
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|
| T |
1626444 |
caaataaatctggagtcttgggaaagatttatgacaaaaagtacttctttcgaaagggagaaataggggattggattaattatctttctccttcaatggt |
1626345 |
T |
|
| Q |
242 |
tgaaaaattgtccaaggtcattgaagagaagttaggtggatctg |
285 |
Q |
| |
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|| || || ||||| |||| ||||| || ||| ||||||||| |
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|
| T |
1626344 |
agataagttatccaaaatcatagaagaaaaattaagtggatctg |
1626301 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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