View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9335-LTR4-TNT-insertion-5 (Length: 87)

Name: F9335-LTR4-TNT-insertion-5
Description: F9335-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9335-LTR4-TNT-insertion-5
F9335-LTR4-TNT-insertion-5
[»] chr6 (7 HSPs)
chr6 (7-77)||(1459519-1459589)
chr6 (7-58)||(1470920-1470971)
chr6 (8-55)||(24417486-24417533)
chr6 (8-56)||(370784-370832)
chr6 (10-56)||(1442107-1442153)
chr6 (15-56)||(176345-176386)
chr6 (7-56)||(7564750-7564799)
[»] chr5 (3 HSPs)
chr5 (8-58)||(11081817-11081867)
chr5 (8-56)||(23766861-23766909)
chr5 (8-56)||(23816709-23816757)
[»] chr3 (9 HSPs)
chr3 (8-58)||(3754604-3754654)
chr3 (8-56)||(803217-803265)
chr3 (8-55)||(2456253-2456300)
chr3 (8-56)||(989400-989448)
chr3 (8-56)||(2442043-2442091)
chr3 (8-56)||(4142133-4142181)
chr3 (8-56)||(4157943-4157991)
chr3 (8-55)||(771499-771546)
chr3 (8-55)||(2476638-2476685)
[»] chr7 (1 HSPs)
chr7 (7-56)||(3927062-3927111)
[»] scaffold0044 (1 HSPs)
scaffold0044 (7-55)||(89146-89194)
[»] chr2 (1 HSPs)
chr2 (14-55)||(34560917-34560958)
[»] chr1 (1 HSPs)
chr1 (7-56)||(51381454-51381503)
[»] chr4 (2 HSPs)
chr4 (8-56)||(22672126-22672174)
chr4 (14-58)||(55419792-55419836)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 9e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 1459589 - 1459519
Alignment:
Q  7 atttgggttatgaaagattttggaaataaagaatcttggactaaattgtttattgtcccgtttgctgaatt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459589 atttgggttatgaaagattttggaaataaagaatcttggactaaattgtttattgtcccgtttgctgaatt 1459519  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 1470971 - 1470920
Alignment:
Q  7 atttgggttatgaaagattttggaaataaagaatcttggactaaattgttta 58  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  1470971 atttgggttatgaaagattatggaaataaagattcttggtctaaattgttta 1470920  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 24417533 - 24417486
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgt 55  Q
    ||||| |||||||||| | |||||||||||||||||||||||||||||    
T  24417533 tttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 370832 - 370784
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    |||||||||||||  ||| |||||||||||| |||||||||||||||||    
T  370832 tttgggttatgaagaattatggaaataaagattcttggactaaattgtt 370784  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 1442153 - 1442107
Alignment:
Q  10 tgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    ||||||||||| |||| ||||| |||||| |||||||||||||||||    
T  1442153 tgggttatgaaggattatggaattaaagattcttggactaaattgtt 1442107  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 176345 - 176386
Alignment:
Q  15 tatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    |||||| |||| |||||||||||| |||||||||||||||||    
T  176345 tatgaatgattatggaaataaagattcttggactaaattgtt 176386  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 7564799 - 7564750
Alignment:
Q  7 atttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    |||||||||||||| |||| |||||| || || |||||||||||||||||    
T  7564799 atttgggttatgaaggattatggaaacaaggattcttggactaaattgtt 7564750  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 11081817 - 11081867
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgttta 58  Q
    ||||||||||||| || | |||||||||||| |||||||||||||||||||    
T  11081817 tttgggttatgaaggagtatggaaataaagagtcttggactaaattgttta 11081867  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 23766909 - 23766861
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    ||||| |||||||||| | |||||||||||| |||||||||||||||||    
T  23766909 tttggattatgaaagaatatggaaataaagagtcttggactaaattgtt 23766861  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 23816757 - 23816709
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    ||||| |||||||||| | |||||||||||| |||||||||||||||||    
T  23816757 tttggattatgaaagaatatggaaataaagagtcttggactaaattgtt 23816709  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 3754604 - 3754654
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgttta 58  Q
    ||||||||||||| || | |||||||||||| |||||||||||||||||||    
T  3754604 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgttta 3754654  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 803265 - 803217
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    |||||||||||||||| | |||||||||||| ||||||||||| |||||    
T  803265 tttgggttatgaaagaatatggaaataaagagtcttggactaagttgtt 803217  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 2456253 - 2456300
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgt 55  Q
    ||||||||||||| || | |||||||||||| ||||||||||||||||    
T  2456253 tttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 989400 - 989448
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    ||||||| |||||||| |  ||||||||||| |||||||||||||||||    
T  989400 tttgggtaatgaaagagtacggaaataaagagtcttggactaaattgtt 989448  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 2442043 - 2442091
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  2442043 tttggattatgaaggagtatggaaataaagattcttggactaaattgtt 2442091  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 4142181 - 4142133
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  4142181 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 4142133  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 4157991 - 4157943
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  4157991 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 4157943  T

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Target: chr3; HSP #8
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 771546 - 771499
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgt 55  Q
    ||||||||||||| || | |||||||| ||| ||||||||||||||||    
T  771546 tttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

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Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 2476638 - 2476685
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgt 55  Q
    ||||| |||||||| | | |||||||||||| ||||||||||||||||    
T  2476638 tttggattatgaaacactatggaaataaagagtcttggactaaattgt 2476685  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 3927062 - 3927111
Alignment:
Q  7 atttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    |||||||||||||| |||| |||||||||| | |||||||||||||||||    
T  3927062 atttgggttatgaaggattatggaaataaaaattcttggactaaattgtt 3927111  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 89146 - 89194
Alignment:
Q  7 atttgggttatgaaagattttggaaataaagaatcttggactaaattgt 55  Q
    |||||||||||||| || | |||||||||||| ||||||||||||||||    
T  89146 atttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 34560958 - 34560917
Alignment:
Q  14 ttatgaaagattttggaaataaagaatcttggactaaattgt 55  Q
    |||||||||| | |||||||||| ||||||||||||||||||    
T  34560958 ttatgaaagaatatggaaataaaaaatcttggactaaattgt 34560917  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 51381503 - 51381454
Alignment:
Q  7 atttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    |||||| |||||||||| | ||||||| |||| |||||||||||||||||    
T  51381503 atttggattatgaaagaatatggaaatgaagagtcttggactaaattgtt 51381454  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 22672174 - 22672126
Alignment:
Q  8 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 56  Q
    ||||||| ||||| || | ||||||||| ||||||||||||||||||||    
T  22672174 tttgggtaatgaaggaatatggaaataaggaatcttggactaaattgtt 22672126  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 55419792 - 55419836
Alignment:
Q  14 ttatgaaagattttggaaataaagaatcttggactaaattgttta 58  Q
    ||||||| | || |||||||||||| |||||||||||||||||||    
T  55419792 ttatgaaggtttatggaaataaagattcttggactaaattgttta 55419836  T

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