View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9335-LTR4-TNT-insertion-9 (Length: 624)
Name: F9335-LTR4-TNT-insertion-9
Description: F9335-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9335-LTR4-TNT-insertion-9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 617; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Complemental strand, 21379606 - 21378990
Alignment:
| Q |
8 |
gatcaaaatattcaaaactatgttcacttgcaaccatttggtccaaacccaatcttaccaccaccaacatcataaacaacttctagtgttctttgttgca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21379606 |
gatcaaaatattcaaaactatgttcacttgcaaccatttggtccaaacccaatcttaccaccaccaacatcataaacaacttctagtgttctttgttgca |
21379507 |
T |
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| Q |
108 |
cattcccaaagatagtaatatcactatcatctctattcgctgcaaatgccaaacaaacttgcctcgaactcacagtgaaaagtactccgtgtgcaccaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21379506 |
cattcccaaagatagtaatatcactatcatctctattcgctgcaaatgccaaacaaacttgcctcgaactcacagtgaaaagtactccgtgtgcaccaag |
21379407 |
T |
|
| Q |
208 |
ctccacggtgacaccaccaccaaagacaaaactaatcttcggaacaaccacattattcctccctctaagatcgtagcatgtatctaaaatggaaaacccc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21379406 |
ctccacggtgacaccaccaccaaagacaaaactaatcttcggaacaaccacattattcctccctctaagatcgtagcatgtatctaaaatggaaaacccc |
21379307 |
T |
|
| Q |
308 |
gaagcagctggatatttcgccatttctttccggaaagcattacgaaggctagcataggtagatggtggcagccgtgtaatgacggtaccagagtcaataa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21379306 |
gaagcagctggatatttcgccatttctttccggaaagcattacgaaggctagcataggtagatggtggcagccgtgtaatgacggtaccagagtcaataa |
21379207 |
T |
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| Q |
408 |
tggcgccaccggaggagaaaatagaggatgatattgaaagcttggttttggcaatactgattccaacgatgtcaagaccgtagaaggaattactacgtga |
507 |
Q |
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| T |
21379206 |
tggcgccaccggaggagaaaatagaggatgatattgaaagcttggttttggcaatactgattccaacgatgtcaagaccgtagaaggaattactacgtga |
21379107 |
T |
|
| Q |
508 |
gattgtggataagggagtgtatttaacggtgttgttggccaccttataattatcggtagctccaaatgtgaggtggccaacaacgctggaagtagaagga |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21379106 |
gattgtggataagggagtgtatttaacggtgttgttggccaccttataattatcggtagctccaaatgtgaggtggccaacaacgctggaagtagaagga |
21379007 |
T |
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| Q |
608 |
agacaataagagaaaat |
624 |
Q |
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||||||||||||||||| |
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| T |
21379006 |
agacaataagagaaaat |
21378990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 531
Target Start/End: Complemental strand, 21406246 - 21405723
Alignment:
| Q |
8 |
gatcaaaatattcaaaactatgttcacttgcaaccatttggtccaaacccaatcttaccaccaccaacatcataaacaacttctagtgttctttgttgca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
21406246 |
gatcaaaatattcaaaactatgttcacttgcaaccatttggtccaaacccaatcttaccaccaccaacatcataaacaacctctaatgttctttgttgca |
21406147 |
T |
|
| Q |
108 |
cattcccaaagatagtaatatcactatcatctctattcgctgcaaatgccaaacaaacttgcctcgaactcacagtgaaaagtactccgtgtgcaccaag |
207 |
Q |
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|||| |||||||||||||||||||||||||||| ||| | ||||| ||||||||| ||||| || ||||| | | |||||| || | || | | |
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| T |
21406146 |
catttccaaagatagtaatatcactatcatctccatttggcgcaaacgccaaacaagcttgcttcaaactcgccacgtaaagtatccctggcgcggctat |
21406047 |
T |
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| Q |
208 |
ctccacggtgacaccaccaccaaagacaaaactaatcttcggaacaaccacattattcctccctctaagatcgtagcatgtatctaaaatggaaaacccc |
307 |
Q |
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||||| ||||||||||| || | || |||||||||||| |||| ||| | || ||| |||||||| || ||||| |||||||| |||| | | |
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| T |
21406046 |
ttccaccgtgacaccacctccgaggaaaaaactaatctttggaatggaaacaatcttgtacccgctaagatcataacatgtgtctaaaattgaaaccgct |
21405947 |
T |
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| Q |
308 |
gaagcagctggatatttcgccatttctttccggaaagcattacgaaggctagcataggtagatggtggcagccgtgtaatgacggtaccagagtcaataa |
407 |
Q |
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| |||| ||||||| |||| ||| |||| ||| | || || ||||||||||||| || || |||||||||||||| |||||||||||||| |||| |
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| T |
21405946 |
ggagcaactggatacttcgtcatgccttttttgaaggaatctcggaggctagcataggcagtcggaggcagccgtgtaataacggtaccagagtcgataa |
21405847 |
T |
|
| Q |
408 |
tggcgccaccggaggagaaaatagaggatgatattgaaagcttggttttggcaatactgattccaacgatgtcaagaccgtagaaggaattactacgtga |
507 |
Q |
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|||| |||||||||||||||||||||||||| |||| |||||||||| ||| |||||||| | |||||||| |||||||||||||| || || || |
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| T |
21405846 |
tggcaccaccggaggagaaaatagaggatgagattggaagcttggttccaccaacgctgattccggcaatgtcaaggccgtagaaggaattgctccggga |
21405747 |
T |
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| Q |
508 |
gattgtggataagggagtgtattt |
531 |
Q |
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|| ||||| |||| ||||||||| |
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| T |
21405746 |
gacagtggagaaggaagtgtattt |
21405723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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