View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9336-LTR4-TNT-insertion-10 (Length: 691)
Name: F9336-LTR4-TNT-insertion-10
Description: F9336-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9336-LTR4-TNT-insertion-10 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 650; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 7 - 681
Target Start/End: Original strand, 3416812 - 3417486
Alignment:
| Q |
7 |
agaaagttgaggaactcaaaccctgaaaaaacatatgtatgttatcttctcaccccttttccccaattcattgcataatctctaatcttccccaattcaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3416812 |
agaaagttgaggaactcaaaccctgaaaaaacatatgtatgttatcttctcaccccttttccccaattcattgcataatctctaatcttccccaattcaa |
3416911 |
T |
|
| Q |
107 |
ttttgtcaatcattttctctttgttattctccttctcgtcttcacaaatctaagagaaaatcatggttacagatataaaatttgaagcttgagagggaga |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3416912 |
ttttgtcaatcattttctctttgttattctccttctcgtcttcacaaatctaagagaaaatcatggttacagatataaaatttgaagcttgagagggaga |
3417011 |
T |
|
| Q |
207 |
ttattcaggtattgannnnnnnaaacattgcacgattcaaatctggctcaacccattctctggtgtgaggtctgggttgcgtcgagttcgaatcaacagt |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417012 |
ttattcaggtattgatttttttaaacattgcacgattcaaatctggctcaacccattctctggtgtgaggtctgggttgcgtcgagttcgaatcaacagt |
3417111 |
T |
|
| Q |
307 |
gaaaatgttgctgattcgtttacgtgggtttggcgttgattcatttgatctgttttggactctgatgacgttgttatcactaatgcggacctgagtttat |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417112 |
gaaaatgttgctgattcgtttacgtgggtttggcgttgattcatttgatctgttttggactctgatgacgttgttatcactaatgcggacctgagtttat |
3417211 |
T |
|
| Q |
407 |
gctgaatgatgttcaagccgttgttaatgtgtgtatggtgaagggattttctttcacttccttttgatgaagatggattttggggattttctttctcacg |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417212 |
gctgaatgatgttcaagccgttgttaatgtgtatatggtgaagggattttctttcacttccttttgatgaagatggattttggggattttctttctcacg |
3417311 |
T |
|
| Q |
507 |
ctgctgttaccgttagtgttttgaaaacaatttgttcaatctttaattgcaactttcacaacaaatttgaatataagcattgtaatttagagagttgttg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3417312 |
ctgctgttaccgttagtgttttgaaaacaatttgttcaatctttaattgcaactttcacaacaaatttgaatataagcattgtaatttagagagttgttg |
3417411 |
T |
|
| Q |
607 |
tttataaaggtcagacaatatcttgtatttgacaatgggtctgagatgaattcagtgatgaatttcttgtgatta |
681 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3417412 |
tttataaaggtcagacaatatcttgtatttgacaatgggtctgagatgaattcagtgatgaatttcttgtgatta |
3417486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 353 - 681
Target Start/End: Complemental strand, 21409989 - 21409666
Alignment:
| Q |
353 |
gatctgttttggactctgatgacgttgttatcactaatgcggacctgagtttatgctgaatgatgttcaagccgttgttaatgtgtgtatggtgaaggg- |
451 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||||||| ||||||| |||| |
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|
| T |
21409989 |
gatctcttttggactctgatgacgttgttatcactcccgcggatctgagtttatgttgaatggtgttcaagctgctgttaatgtgtatatggtggagggg |
21409890 |
T |
|
| Q |
452 |
attttctttcacttccttttgatgaagatggattttggggattttctttctcacgctgctgttaccgttagtgttttgaaaacaatttgttcaatcttta |
551 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| |
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| T |
21409889 |
attttctttcatttccttttgatgaagatggattttgggggttttctttctcaagctgctgtta------gtgttttcaaatcaatttgttgaatcttta |
21409796 |
T |
|
| Q |
552 |
attgcaactttcacaacaaatttgaatataagcattgtaatttagagagttgttgtttataaaggtcagacaatatcttgtatttgacaatgggtctgag |
651 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |||| |
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| T |
21409795 |
attgcaacttccacaacaaatttgaatataagctttgtaatttagagagttgttgtttacaaaggtcacataatatcttgtatttgacaatgggtttgag |
21409696 |
T |
|
| Q |
652 |
atgaattcagtgatgaatttcttgtgatta |
681 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
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|
| T |
21409695 |
atgaatttggtgatgaatttcttgtgatta |
21409666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 41779703 - 41779665
Alignment:
| Q |
65 |
ttccccaattcattgcataatctctaatcttccccaatt |
103 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
41779703 |
ttccccaattcattgcataatctctattcttccccaatt |
41779665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 587
Target Start/End: Original strand, 41355361 - 41355591
Alignment:
| Q |
357 |
tgttttggactctgatgacgttgttatcactaatgcggacctgagtttatgctgaatgatgttcaagccgttgttaatgtgtgtatggtgaagg-gattt |
455 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| || || |||||||| | | |||| ||||||||| | ||||||||||| || |||| ||| ||||| |
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|
| T |
41355361 |
tgttttggactctgacgacgttgttatgactaccgcagatctgagtttttacataatggtgttcaagctgctgttaatgtgtataaggtggaggagattt |
41355460 |
T |
|
| Q |
456 |
tctttcacttccttttgatgaagatggattttggggattttctttctcacgctgctgttaccgttagtgttttgaaaacaatttgttcaa---tctttaa |
552 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| | |||||||||| ||||||||||||| || ||||||| |
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| T |
41355461 |
tatttcacttccttttgatgaagatggattttgggaattttctttttcacgc-gctg---ctgttagtgtttccaaaacaatttgttgaatcttctttaa |
41355556 |
T |
|
| Q |
553 |
ttgcaactttcacaacaaatttgaatataagcatt |
587 |
Q |
| |
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||| ||||| |||| |||||| | ||||||||||| |
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| T |
41355557 |
ttgtaacttccacagcaaattagcatataagcatt |
41355591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 623 - 681
Target Start/End: Original strand, 41356992 - 41357050
Alignment:
| Q |
623 |
aatatcttgtatttgacaatgggtctgagatgaattcagtgatgaatttcttgtgatta |
681 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||| |
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|
| T |
41356992 |
aatatcttgtatttgacaatggatttgagatgaattcggtgatgaatgtcttgtgatta |
41357050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 3484071 - 3484109
Alignment:
| Q |
65 |
ttccccaattcattgcataatctctaatcttccccaatt |
103 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
3484071 |
ttcctcaattcattgcataatctctattcttccccaatt |
3484109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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