View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9336-LTR4-TNT-insertion-2 (Length: 168)

Name: F9336-LTR4-TNT-insertion-2
Description: F9336-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9336-LTR4-TNT-insertion-2
F9336-LTR4-TNT-insertion-2
[»] chr3 (1 HSPs)
chr3 (7-158)||(50557777-50557928)
[»] chr1 (2 HSPs)
chr1 (18-159)||(32518526-32518669)
chr1 (7-128)||(38858611-38858738)
[»] chr2 (3 HSPs)
chr2 (7-126)||(11124506-11124625)
chr2 (7-158)||(10164610-10164765)
chr2 (7-96)||(2472905-2472994)
[»] chr7 (3 HSPs)
chr7 (88-159)||(21869500-21869573)
chr7 (19-158)||(46465826-46465965)
chr7 (7-43)||(21869585-21869621)
[»] scaffold0009 (3 HSPs)
scaffold0009 (88-149)||(4741-4804)
scaffold0009 (86-149)||(4131-4196)
scaffold0009 (88-133)||(4553-4598)
[»] chr6 (2 HSPs)
chr6 (7-114)||(24663635-24663742)
chr6 (113-149)||(24663322-24663360)
[»] chr5 (1 HSPs)
chr5 (91-146)||(8316264-8316321)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 9e-81; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 50557928 - 50557777
Alignment:
Q  7 aaattcacaggaaaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtcaactct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50557928 aaattcacaggaaaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtcaactct 50557829  T
Q  107 caaaattatataatagttgtgcctttaagagtattgaatacaattttaatta 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50557828 caaaattatataatagttgtgcctttaagagtattgaatacaattttaatta 50557777  T

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Target: chr1 (Bit Score: 97; Significance: 6e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 32518526 - 32518669
Alignment:
Q  18 aaaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtcaactctcaaaattatat 117  Q
    ||||||||||| ||||| |||||||||| | |||||||| | ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||    
T  32518526 aaaaaacaataatgttgcgaggaaaattcagaagaagaaattaaataatattatgtttctatttcacaggatataaattggtcaactctcaaaattatat 32518625  T
Q  118 aatagttgtgccttta--agagtattgaatacaattttaattag 159  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  32518626 aatagttgtgcctttaagagagtattgaatacaattttaattag 32518669  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 38858611 - 38858738
Alignment:
Q  7 aaattcacaggaaaaaacaatactgttgtgag------gaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtc 100  Q
    ||||||||||||||||||||||||||||||||      ||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  38858611 aaattcacaggaaaaaacaatactgttgtgaggatgaggaaaatttataagaagaattaaaataatattatgtttctattttacaggatataaattggtc 38858710  T
Q  101 aactctcaaaattatataatagttgtgc 128  Q
    ||||||||||||||||||||||||||||    
T  38858711 aactctcaaaattatataatagttgtgc 38858738  T

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Target: chr2 (Bit Score: 84; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 11124625 - 11124506
Alignment:
Q  7 aaattcacaggaaaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtcaactct 106  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||  ||||||||| |||| |||| ||||| ||||||||    
T  11124625 aaattcacgggaaaaaacaatattgttatgaggaaaatttacaagaagaattcaaataatattatatttctatttcacaggatattaattgatcaactct 11124526  T
Q  107 caaaattatataatagttgt 126  Q
    ||||||||||||||||||||    
T  11124525 caaaattatataatagttgt 11124506  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 10164610 - 10164765
Alignment:
Q  7 aaattcacaggaaaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtcaactct 106  Q
    |||||||| ||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||  ||||||||| |||  |||||||||| ||||||||    
T  10164610 aaattcac-ggaaaaaacaatattgttatgaggaaaacttacacgaagaattcaaataatattatatttctatttcacatgatataaattgatcaactct 10164708  T
Q  107 caaaattatataata---gttgtgccttta--agagtattgaatacaattttaatta 158  Q
    |||||||||||||||   ||||||||||||  |||||||| ||||||||||||||||    
T  10164709 caaaattatataatagttgttgtgcctttaagagagtattaaatacaattttaatta 10164765  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 2472994 - 2472905
Alignment:
Q  7 aaattcacaggaaaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaatt 96  Q
    |||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  2472994 aaatacacaggaaaaaacaattctattgtgagaaaaatttacaagaagaattcaaataatattatgtttctatttcacaggatataaatt 2472905  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 21869573 - 21869500
Alignment:
Q  88 atataaattggtcaactctcaaaattatataatagttgtgcctttaagag--tattgaatacaattttaattag 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  21869573 atataaattggtcaactctcaaaattatataatagttgtgcctttaagagaatattgaatacaatttgaattag 21869500  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 46465826 - 46465965
Alignment:
Q  19 aaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtcaactctcaaaattatata 118  Q
    |||||||||||||||||||| |||||| |||||||  |   |||||||||||  ||| ||||| |||  |||||||||| |||| ||| |||||||||||    
T  46465826 aaaaacaatactgttgtgagaaaaattcacaagaaata---aaataatattatatttttatttcacacgatataaattgatcaattcttaaaattatata 46465922  T
Q  119 atagttgtgccttt---aagagtattgaatacaattttaatta 158  Q
    ||||||||| ||||    |||||||||||||||||||||||||    
T  46465923 atagttgtgtcttttaagagagtattgaatacaattttaatta 46465965  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 21869621 - 21869585
Alignment:
Q  7 aaattcacaggaaaaaacaatactgttgtgaggaaaa 43  Q
    ||||||||| |||||||||||||||||||||||||||    
T  21869621 aaattcacacgaaaaaacaatactgttgtgaggaaaa 21869585  T

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Target: scaffold0009 (Bit Score: 45; Significance: 6e-17; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 4804 - 4741
Alignment:
Q  88 atataaattggtcaactctcaaaattatataatagttgtgccttta--agagtattgaatacaa 149  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||||||||||    
T  4804 atataaattggtcaactttcaaaattatataataattgtgcctttatgagagtattgaatacaa 4741  T

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Target: scaffold0009; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 4196 - 4131
Alignment:
Q  86 gtatataaattggtcaactctcaaaattatataatagttgtgccttta--agagtattgaatacaa 149  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||  ||||||||||||||||    
T  4196 gtatataaattggtcaactttcaaaattatataataattgtgtctttatgagagtattgaatacaa 4131  T

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Target: scaffold0009; HSP #3
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 4553 - 4598
Alignment:
Q  88 atataaattggtcaactctcaaaattatataatagttgtgccttta 133  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||    
T  4553 atataaattggtcaactttcaaaattatataataattgtgccttta 4598  T

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Target: chr6 (Bit Score: 44; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 24663742 - 24663635
Alignment:
Q  7 aaattcacaggaaaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtcaactct 106  Q
    |||||||| |||||||  ||||| ||||||||||||||| | |||||||| |||   ||||||| ||||||| || | || ||||||||||||||||| |    
T  24663742 aaattcacgggaaaaagaaatacggttgtgaggaaaattcaaaagaagaaatcactaaatattatgtttctacttcataggatataaattggtcaacttt 24663643  T
Q  107 caaaatta 114  Q
    ||||||||    
T  24663642 caaaatta 24663635  T

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Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 24663360 - 24663322
Alignment:
Q  113 tatataatagttgtgccttta--agagtattgaatacaa 149  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  24663360 tatataatagttgtgcctttaagagagtattgaatacaa 24663322  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 8316264 - 8316321
Alignment:
Q  91 taaattggtcaactctcaaaattatataatagttgtgccttta--agagtattgaata 146  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||  |||||||||||||    
T  8316264 taaattgatcaactctcaaaattatataataattgtgcttttatgagagtattgaata 8316321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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