View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9336-LTR4-TNT-insertion-3 (Length: 534)
Name: F9336-LTR4-TNT-insertion-3
Description: F9336-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9336-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Complemental strand, 31948276 - 31947762
Alignment:
| Q |
10 |
aagaagaaaatttcagaaagaaggcagagaagaaaatttcataccaatttttggagctaaagaaaatgcagagcaaagttaactcattttctctttgtga |
109 |
Q |
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| T |
31948276 |
aagaagaaaatttcagaaagaaggcaaagaagaaaatttcataccaatttttggagctaaagaaaatgcagagcaaagttaactcattttctctttgtga |
31948177 |
T |
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| Q |
110 |
tcaagatcaacaactagcatttttggttagggttttaagagaagtaaacacaatcactatatctatattaagttttgtgctacnnnnnnngtctatgcca |
209 |
Q |
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| T |
31948176 |
tcaagatcaacaactagcatttttggttagggttttaagagaagtaaacacaatcactatatctatattaagttttgtgctactttttttgtctatgcca |
31948077 |
T |
|
| Q |
210 |
gcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagagggaagaacaaaaatgaggttgaggatct |
309 |
Q |
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| T |
31948076 |
gcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagagggaagaacaaaaatgaggttgaggatct |
31947977 |
T |
|
| Q |
310 |
aaacaatgctttgtgttctcttattggaaaagataaaaatagtgattattctaatagtgaaggtcaaagggcattaagattgtcagagacattgaatgtt |
409 |
Q |
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| T |
31947976 |
aaacaatgctttgtgttctcttattggaaaagataaaaatagtgattattctaatagtgaaggtcaaagggcattaagattgtcagagacattgaatgtt |
31947877 |
T |
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| Q |
410 |
aatgttgatagtttagaaggtagattagattgcatatttagctgtttggtaaaaaatagagtgttgtgtttaaatatgttagctcattgggctaacatag |
509 |
Q |
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| T |
31947876 |
aatgttgatagtttagaaggtagattagattgcatatttagctgtttggtaaaaaatagagtgttgtgtttaaatatgttagctcattaggctaacatag |
31947777 |
T |
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| Q |
510 |
gtagagtaaaaatta |
524 |
Q |
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| T |
31947776 |
gtagagtaaaaatta |
31947762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 524
Target Start/End: Complemental strand, 9385186 - 9384676
Alignment:
| Q |
15 |
gaaaatttcagaaagaaggcagagaagaaaatttcataccaatttttggagctaaagaaaatgcagagcaaagttaactcattttctctttgtgatcaag |
114 |
Q |
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| T |
9385186 |
gaaaatttcagaaagaaggcaaggaagaaaatttcataccaacttttggagctaaagaaaatgcagaacaaagttaactcattttctctttgtgatcaag |
9385087 |
T |
|
| Q |
115 |
atcaacaactagcatttttggttagggttttaagagaagtaaacacaatcactatatctatattaagttttgtgctacnnnnnnngtctatgccagcact |
214 |
Q |
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| T |
9385086 |
atcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatatctatattaagttctgtactactttttttttctatgccagcact |
9384987 |
T |
|
| Q |
215 |
tggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaaga-gggaagaacaaaaatgaggttgaggatctaaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9384986 |
tggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagaagggaagaacaaaaatgaggttgaggatctaaac |
9384887 |
T |
|
| Q |
314 |
aatgctttgtgttctcttattggaaaagataaaaatagtgattattctaatagtgaaggtcaaagggcattaagattgtcagagacattgaatgttaatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
9384886 |
aatgctttgtgttctcttattggaaaagataaaaatagtgatcattctaatagtgaaggtcaaagggcattgagattgttagagacattgaatgttaatg |
9384787 |
T |
|
| Q |
414 |
ttgatagtttagaaggtagattagattgcatatttagctgtttggtaaaaaatagagtgttgtgtttaaatatgttagctcattgggctaacataggtag |
513 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| | |
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| T |
9384786 |
ttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttgaatatgttaactcattaggctaacataggtgg |
9384687 |
T |
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| Q |
514 |
agtaaaaatta |
524 |
Q |
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||||||||||| |
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| T |
9384686 |
agtaaaaatta |
9384676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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