View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9336-LTR4-TNT-insertion-5 (Length: 102)
Name: F9336-LTR4-TNT-insertion-5
Description: F9336-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9336-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 66; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 44158507 - 44158572
Alignment:
| Q |
11 |
gagggaagaaaactaccttctaattttaatagatcgtgttgtatttttcccataaaacctatttaa |
76 |
Q |
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| T |
44158507 |
gagggaagaaaactaccttctaattttaatagatcgtgttgtatttttcccataaaacctatttaa |
44158572 |
T |
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