View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9336-LTR4-TNT-insertion-6 (Length: 145)
Name: F9336-LTR4-TNT-insertion-6
Description: F9336-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9336-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 9e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 3219905 - 3219777
Alignment:
| Q |
9 |
actaaacatataatttttatttaaaagacgtggaatatatatttatagattctagttggaagacatcatattaggtttacaattacacaccattatcgaa |
108 |
Q |
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| T |
3219905 |
actaaacatataatttttatttaaaagacatggaatatatatttatagattctagttggaagacatcatattaggtttacaattacacaccattatcgaa |
3219806 |
T |
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| Q |
109 |
atgtaatgttattttatcggttataatta |
137 |
Q |
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| T |
3219805 |
atgtaatgttattttatcggttataatta |
3219777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 28150761 - 28150662
Alignment:
| Q |
26 |
tatttaaaagacgtggaatata--tatttatagattctagttggaagacatcatattaggtttacaattacacaccattatcgaaatgtaatgttatttt |
123 |
Q |
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| T |
28150761 |
tatttaaaagacatggaatagaaatatttgcagatgctagttgcaagacatcgagttagatttacaattacaca-cattatcagaacgtaatgttatttt |
28150663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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