View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9336-LTR4-TNT-insertion-8 (Length: 428)
Name: F9336-LTR4-TNT-insertion-8
Description: F9336-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9336-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 30019885 - 30019475
Alignment:
| Q |
8 |
catatttcctccaacgataaccatcatccaaaatatcatcaacacttcttgtctgaaatgcaaaccttggcacttttgtggtcttcttcactctcccacc |
107 |
Q |
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| T |
30019885 |
catatttcctccaacgataaccatcatccaaaatatcatcaacacttcttgtctgaaatgcaaaccttggcacttttgtggtcttcttcactctcccacc |
30019786 |
T |
|
| Q |
108 |
tttaacccttttctcctctaacttgtttcccttttcttcttcatgtagttgataactcccactttcattattatggattaccaaattagaagaagatgaa |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30019785 |
tttaacccttttctcctctaacttgtttcccttttcttcttcatgtagttgataactcccactttcattattatggattaccaaattagaagaagatgaa |
30019686 |
T |
|
| Q |
208 |
gtgcattgttgaatattatcaacttttaatgtctccttagcatccccaacaagcaagttattgttgttttgacctaagaaaaagttaccccactcaatac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30019685 |
gtgcattgttgaatattatcaacttttaatgtctccttagcatccccaacaagcaagttattgttgttttgacctaagaaaaagttaccccactcaatac |
30019586 |
T |
|
| Q |
308 |
caccaaggccttgatcttgtgattccaaagggtaattttgtaaagaaggtgtaaagaagaaggggagagaagtattattgttttgagtttgtggtgatgg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30019585 |
caccaaggccttgatcttgtgattccaaagggtaattttgtaaagaaggtgtaaagaagaaggggagagaagtattattgttttgagtttgtggtgatgg |
30019486 |
T |
|
| Q |
408 |
tatattcatta |
418 |
Q |
| |
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||||||||||| |
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| T |
30019485 |
tatattcatta |
30019475 |
T |
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