View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9336-LTR4-TNT-insertion-9 (Length: 563)
Name: F9336-LTR4-TNT-insertion-9
Description: F9336-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9336-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 8 - 553
Target Start/End: Original strand, 4205327 - 4205872
Alignment:
| Q |
8 |
aaaagcacctaaagagttctgaaagactgaaccctcagacactgttacagctttcatattgccatgttttacgtaaacaataacaagattgccgtcatga |
107 |
Q |
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| T |
4205327 |
aaaagcacctaaagagttctgaaagactgaaccctcagacactgttacagctttcatattgccatgttttacgtaaacaataacaagattgccgtcatga |
4205426 |
T |
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| Q |
108 |
atctttcggttgaatgctattgttttttcaggattactagtcaataacatcttgaaaggcttcaaatttttcaacctagtgaaaaagaaaaaccatatgt |
207 |
Q |
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| T |
4205427 |
atctttcggttgaatgctattgttttttcaggattactagtcaataacatcttgaaaggcttcaaatttttcaacctagtgaaaaagaaaaaccatatgt |
4205526 |
T |
|
| Q |
208 |
catccacaagccaattacatatgtgattatgtgtgagtatatatagggtatgtttcgataaacaacttaatttaaggcttgtaaggtaagtcattatcat |
307 |
Q |
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| T |
4205527 |
catccacaagccaattacatatgtgattatgtgtgagtatatatagggtatgtttcgataaacaacttaatttaaggcttgtaaggtaagtcattatcat |
4205626 |
T |
|
| Q |
308 |
ataagtgcttgtctatacatcatttctatataataagataaaatgaattcacaagtaaacaaaacattattggaaaaaataattgaatggatgaagggga |
407 |
Q |
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| T |
4205627 |
ataagtgcttgtctatacatcatttctatataataagataaaatgaattcacaagtaaacaaaacattattggaaaaaataattgaatggatgaagggga |
4205726 |
T |
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| Q |
408 |
aaccaaccaatatagatttgaatttgaaccaacaaatttggattgacctaaacaccagtaggggggtttagaaactcactctgtgtttcatgaaccaaca |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4205727 |
aaccaaccaatatagatttgaatttgaaccaacaaatttggattgacctaaacaccagtaggggggtttagaaactcactctgtgtttcatgaaccaaca |
4205826 |
T |
|
| Q |
508 |
aacaacagcattgacctaaacaccagtagccgttcaatttggatta |
553 |
Q |
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| T |
4205827 |
aacaacagcattgacctaaacaccagtagccgttcaatttggatta |
4205872 |
T |
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