View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9337-LTR4-TNT-insertion-1 (Length: 441)
Name: F9337-LTR4-TNT-insertion-1
Description: F9337-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9337-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 37838245 - 37837824
Alignment:
| Q |
10 |
cttctcaattttacttgtttccataaataaagatctagcccaggtcactatgtggatctcctccgcatcattattcaaagagggaagtaatattttcttt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838245 |
cttctcaattttacttgtttccataaataaagatctagcccaggtcactatgtggatctcctccgcatcattattcaaagagggaagtaatattttcttt |
37838146 |
T |
|
| Q |
110 |
ctggttattagctcaagcaaaacaactccgtaactatatacgtcagactttcttcccggcactactttatatgcattttctgtcacagaaaacaatgcaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838145 |
ctggttattagctcaagcaaaacaactccgtaactatatacgtcagactttcttcccggcactactttatatgcattttctgtcacagaaaacaatgcaa |
37838046 |
T |
|
| Q |
210 |
acatgttagagaatactatcttgcacaactctacctccaagttgtgtttgaaaataaactcgtcatcacatcctagatatcaaagtattactggctatta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838045 |
acatgttagagaatactatcttgcacaactctacctccaagttgtgtttgaaaataaactcgtcatcacatcctagatatcaaagtattactggctatta |
37837946 |
T |
|
| Q |
310 |
aaggggtgtcagaatcaacattaattgtgagtgaatggtaaattacctggtgcaatatagccaggggtaccaacaacgcgcaatgaaagcaattttctgg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37837945 |
aaggggtgtcagaatcaacattaattgtgagtgaatggtaaattacctggtgcaatatagccaggggtaccaacaacgcgcaatgaaagcaattttctgg |
37837846 |
T |
|
| Q |
410 |
tttcagaataactatgtgaatt |
431 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
37837845 |
tttcagaataactatgtgaatt |
37837824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 37851573 - 37851344
Alignment:
| Q |
11 |
ttctcaattttacttgtttccataaataaagatctagcccaggtcactatgtggatctcctccgcatcattattcaaagagggaagtaatattttctttc |
110 |
Q |
| |
|
||||||||||| | ||| ||||| | || |||||||||||| || |||||||| ||||||| || |||| ||||| ||| |||| ||||| |||||||| |
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|
| T |
37851573 |
ttctcaatttttcctgtctccatcattacagatctagcccaagtaactatgtgcgtctcctctgcctcatcattcatagaaggaactaataatttctttc |
37851474 |
T |
|
| Q |
111 |
tggttattagctcaagcaaaacaactccgtaactatatacgtcagactttcttcccggcactactttatatgcattttctgtcacagaaaacaatgcaaa |
210 |
Q |
| |
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||||||||| ||| ||||||||||||||||| |||||||| |||||||| |||||||||||||| | ||||||||| ||||||||||| ||||||||||| |
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| T |
37851473 |
tggttattatctcgagcaaaacaactccgtagctatatacatcagacttccttcccggcactacatcatatgcattctctgtcacagataacaatgcaaa |
37851374 |
T |
|
| Q |
211 |
catgttagagaatactatcttgcacaactc |
240 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
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|
| T |
37851373 |
catgttagaaaatactatcttgcaaaactc |
37851344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 40 - 293
Target Start/End: Complemental strand, 37832692 - 37832445
Alignment:
| Q |
40 |
agatctagcccaggtcactatgtggatctcctccgcatcattattcaaagagggaagtaatattttctttctggttattagctcaagcaaaacaactccg |
139 |
Q |
| |
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||||||||||||| |||||| | || ||||||| || |||| || |||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
37832692 |
agatctagcccagatcactaagggggtctcctctgcttcatcgtttaaagagggaactaacaatttctttctggttattagctcaagcaaaacaactccg |
37832593 |
T |
|
| Q |
140 |
taactatatacgtcagactttcttcccggcactactttatatgcattttctgtcacagaaaacaatgcaaacatgttagagaatactatcttgcacaact |
239 |
Q |
| |
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|| |||||||| |||||||||||||| || || ||||||||| |||||| || |||||||||||||||||||||||||| |||||||||| |
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| T |
37832592 |
tagctatatacatcagactttcttcctggaacattaacatatgcattctctgtc------aaaaatgcaaacatgttagagaatactattttgcacaact |
37832499 |
T |
|
| Q |
240 |
ctacctccaagttgtgtttgaaaataaactcgtcatcacatcctagatatcaaa |
293 |
Q |
| |
|
| || | |||| | |||| |||||||| || ||||||||||||||| |||||| |
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| T |
37832498 |
ccactttcaagctttgttgcaaaataaagtcatcatcacatcctagaaatcaaa |
37832445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 37843997 - 37843861
Alignment:
| Q |
104 |
ttctttctggttattagctcaagcaaaacaactccgtaactatatacgtcagactttcttcccggcactactttatatgcattttctgtcacagaaaaca |
203 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||||| || |||||||| ||||||||||| | |||||| | ||||||||| |||||||| | ||||| |
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| T |
37843997 |
ttctttcttgttattatctcaagcaaaataactccatagctatatacatcagactttctgctttgcactattgcatatgcattctctgtcacgggaaaca |
37843898 |
T |
|
| Q |
204 |
atgcaaacatgttagagaatactatcttgcacaactc |
240 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||| |
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| T |
37843897 |
atgtaaacatgttagaaaatactatcttgcacaactc |
37843861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 37845611 - 37845474
Alignment:
| Q |
103 |
tttctttctggttattagctcaagcaaaacaactccgtaactatatacgtcagactttcttcccggcactactttatatgcattttctgtcacagaaaac |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||| | || || ||||||||||||||||| || |
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|
| T |
37845611 |
tttctttctggttattagctcgagcaaaacaactccgtagctgtatacatcagactttctgttgtgcattgctgcatttgcattttctgtcacaggtgac |
37845512 |
T |
|
| Q |
203 |
aatgcaaacatgttagagaatactatcttgcacaactc |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
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| T |
37845511 |
aatgcaaacatgttagagaatactatagtgcacaactc |
37845474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 37843528 - 37843462
Alignment:
| Q |
352 |
ttacctggtgcaatatagccaggggtaccaacaacgcgcaatgaaagcaattttctggtttcagaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||| ||| ||| |||||||| |||| |
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| T |
37843528 |
ttacctggtgcaatatagccaggggtaccaacaacgatcgatgaacgcattttcctggtttctgaat |
37843462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 37851245 - 37851179
Alignment:
| Q |
350 |
aattacctggtgcaatatagccaggggtaccaacaacgcgcaatgaaagcaattttctggtttcaga |
416 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||| ||| | ||||||| ||| ||||||||||| |
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|
| T |
37851245 |
aattacccggagcaatatatccaggggtaccaacaacacgcgacgaaagcattttcctggtttcaga |
37851179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 424
Target Start/End: Complemental strand, 36866926 - 36866512
Alignment:
| Q |
10 |
cttctcaattttacttgtttccataaataaagatctagcccaggtcactatgtggatctcctccgcatcattattcaaagagggaagtaatattttcttt |
109 |
Q |
| |
|
|||||| ||||| | |||||||| |||| ||||||||||||||||||||||||| |||||| ||| |||| ||||| |||||| | ||||| ||||||| |
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|
| T |
36866926 |
cttctcgattttgcctgtttccagcaatacagatctagcccaggtcactatgtgggtctccttcgcctcatcattcatagaggggactaataatttcttt |
36866827 |
T |
|
| Q |
110 |
ctggttattagctcaagcaaaacaactccgtaactatatacgtcagactttcttcccggcactactttatatgcattttctgtcacagaaaacaatgcaa |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||| |||||||||||||| ||||||| | ||| ||||||||||||||||| |||| |||| |
|
|
| T |
36866826 |
ctggttattagctcgagcaaaacaactccatagctatatacatcagactttcttccaggcactatatcataagcattttctgtcacagatgacaaggcaa |
36866727 |
T |
|
| Q |
210 |
acatgttagag-aatactatcttgcacaactctacctccaagttgtgtttgaaaataaactcgtcatcacatcctagatatcaaagtattactggctatt |
308 |
Q |
| |
|
| |||||||| ||||||||||||||||| | |||||| | |||||| ||||| |||||| | ||||||||||| |||||| ||||| | || ||| |
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|
| T |
36866726 |
aactgttagagaaatactatcttgcacaattatacctctgatctgtgttggaaaacaaactcattgccacatcctagaaatcaaactattatttgcaatt |
36866627 |
T |
|
| Q |
309 |
aaaggggtgtcagaatcaacattaattgtgagtgaatggtaaattacctggtgcaatatagccaggggtaccaacaacgcgcaatgaaagcaattttctg |
408 |
Q |
| |
|
|||||| | | | |||||| ||| | ||| ||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||| |
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| T |
36866626 |
aaagggtgatgaaattcaacagtaa-tatgaatgaatagtaaattaccgggtgcaatatagccaggggtaccaacaacgcgtgatgaaagcattttcctg |
36866528 |
T |
|
| Q |
409 |
gtttcagaataactat |
424 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
36866527 |
gtttcagaatgactat |
36866512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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