View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9337-LTR4-TNT-insertion-2 (Length: 391)
Name: F9337-LTR4-TNT-insertion-2
Description: F9337-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9337-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 41158834 - 41159207
Alignment:
| Q |
8 |
attagtttatatcttaactaactttctattcaaccacaaatttaacacgtcttatgaaacaatacgatcaaaactacttcaaagttttagttcgccagct |
107 |
Q |
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| T |
41158834 |
attagtttatatcttaactaactttctattcaaccacaaatttaacacgtcttatgaaacaatacgatcaaaactacttcaaagttttagttcgccagct |
41158933 |
T |
|
| Q |
108 |
cacaactatttttggtgtatgcacttgtgttatggtaaaagtctcagcattacggatcaatcattatcaaagggcctaaacaatgcaataccatgagaca |
207 |
Q |
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| T |
41158934 |
cacaactatttttggtgtatgcacttgtgttatggtaaaagtctcagcattacggatcaatcattatcaaagggcctaaacaatgcaataccatgagaca |
41159033 |
T |
|
| Q |
208 |
tctaatgttggtcaaatatcataattatgatagattatcgtaaaaagattataaataaatgaaagataatgataactttatcatattatcataatcaaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41159034 |
tctaatgttggtcaaatatcataattatgatagattatcgtaaaaagattataaataaatgaaagataatgataactttatcatattatcataatcaaac |
41159133 |
T |
|
| Q |
308 |
attagtgtattcatcattatcatgagtacaaaatgtaatacaaagatttaagtgtgatgtgcatagtataatta |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41159134 |
attagtgtattcatcattatcatgagtacaaaatgtaatacaaagatttaagtgtgatgtgcatagtataatta |
41159207 |
T |
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