View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9339-LTR4-TNT-insertion-1 (Length: 734)
Name: F9339-LTR4-TNT-insertion-1
Description: F9339-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9339-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 6 - 724
Target Start/End: Original strand, 30707352 - 30708070
Alignment:
| Q |
6 |
cagctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagagcagtagttcccttgagagaccattttgagcctctcatactgct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30707352 |
cagctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagagcagtagttcccttgagagaccatcttgagcctctcatactgct |
30707451 |
T |
|
| Q |
106 |
ctcctggttctccattgttgtttttgtgagttctcttacacggagaacgtgtttgttttgttgttgtgaaccggatatcctttgcgcacaattgcagtga |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707452 |
ctcctggttctccattgttgtttttgtgagttctcttacacggagaacgtgtttgttttgttgttgtgaaccggatatcctttgcgcacaattgcagtga |
30707551 |
T |
|
| Q |
206 |
ctaatccctcgagttgggtgggactgcgaggagtggtgaaactctctctcaagaaatttaacactgtattcgcatggctgaatttgaatcaaggatttct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707552 |
ctaatccctcgagttgggtgggactgcgaggagtggtgaaactctctctcaagaaatttaacactgtattcgcatggctgaatttgaatcaaggatttct |
30707651 |
T |
|
| Q |
306 |
ggttaaactgaaagagatcgtttatcatctcatgcaagtgttcatatgccaaacaacctcgtttatttatatttgaaaaaactgtgcagtgtgctgactg |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707652 |
ggttaaactgaaagagatcgtttatcatctcatgcaagtgttcatatgccaaacaacctcgtttatttatatttgaaaaaactgtgcagtgtgctgactg |
30707751 |
T |
|
| Q |
406 |
tggccaaaacctgatttggggagtcaaaaaacattatattgatctccaccacatgggcccattgtgggggtatctttagttaacaagaaacagaataatg |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707752 |
tggccaaaacctgatttggggagtcaaaaaacattatattgatctccaccacatgggcccattgtgggggtatctttagttaacaagaaacagaataatg |
30707851 |
T |
|
| Q |
506 |
aagcaattcatgaaaaacaaaagacaacaatgaagcatannnnnnngttttattattcttgaatgtgactcacacattcacaagttacatacttctgctt |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30707852 |
aagcaattcatgaaaaacaaaagacaacaatgaagcatatttttttgttttattattcttgaatgtgactcacacattcacaagttacatacttctgctt |
30707951 |
T |
|
| Q |
606 |
ttgatcaaagatgcccctgaacaaagtgaaacattatatcaactgaaaaacaaatttgaaacagttaccattgaagatgattctactattgagctgttga |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30707952 |
ttgatcaaagatgcccctgaacaaagtgaaacattatatcaactgaaaaacaaatttgaaacagttaccattgaagatgattctactattgagctgttga |
30708051 |
T |
|
| Q |
706 |
tcttaaccccctttcatta |
724 |
Q |
| |
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||||||||||||||||||| |
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| T |
30708052 |
tcttaaccccctttcatta |
30708070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 30719718 - 30719846
Alignment:
| Q |
6 |
cagctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagagcagtagttcccttgagagaccattttgagcctctcatactgct |
105 |
Q |
| |
|
|||| ||||| ||||| | |||||| ||||||||||| ||||| || || || |||||||| ||||||||| |||||| |||||| ||| ||||||| |
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| T |
30719718 |
cagcgagttcttccacgatagcatgtccgattccacgtgttccgccggtgacgagagcagtgaatcccttgagggaccatcttgagcttctgctactgct |
30719817 |
T |
|
| Q |
106 |
ctcctggttctccattgttgtttttgtga |
134 |
Q |
| |
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||| |||| ||||| |||||||||||| |
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|
| T |
30719818 |
ctctgcgttcgccattcttgtttttgtga |
30719846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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