View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9339-LTR4-TNT-insertion-3 (Length: 436)
Name: F9339-LTR4-TNT-insertion-3
Description: F9339-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9339-LTR4-TNT-insertion-3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Original strand, 24230464 - 24230886
Alignment:
| Q |
8 |
aactcttcaagaagctttgaccgaatctattatcaaagcaattagtgcagcctatgtgttcagaaattgaaccctaccataccaacaaccaatcaaatgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24230464 |
aactcttcaagaagctttgaccgaatctattatcaaagcaattagtgcagcctatgtgttcagaaattgaaccctaccataccaacaaccaatcaaatgt |
24230563 |
T |
|
| Q |
108 |
gattacctattaaacacaataattgaaccaatgatgacacacaatttggataatggatacatgcaatatgtggttatcggaagcatgcattctaaacttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24230564 |
gattacctattaaacacaataattgaaccaatgatgacacacaatttggataatggatacatgcaatatgtggttatcggaagcatgcattctaaacttg |
24230663 |
T |
|
| Q |
208 |
gaagtcaaaag-ataagtagttaaggctgtttttattaagattaagatgttggtaaccccatgctaatgacctatagaacggtgtaacttcttcttgttg |
306 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24230664 |
gaagtcaaaagaataagtagttaaggctgtttttattaagattaagatgttggtaaccccatgctaatgacctatagaacggtgtaacttcttcttgttg |
24230763 |
T |
|
| Q |
307 |
gacttttccgatatgcatgtggcgtagttgagcagcaaagtttta-tatttaaacccatgaaagattcaaaaatagacgtgtctcaaaataactgactta |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24230764 |
gacttttccgatatgcatgtggcgtagttgagcagcaaagttttattatttaaacccatgaaagattcaaaaatagacgtgtctcaaaataactgactta |
24230863 |
T |
|
| Q |
406 |
ttttattttttaatacaatatta |
428 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
24230864 |
ttttattttttaatacaatatta |
24230886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 13716952 - 13716993
Alignment:
| Q |
387 |
tctcaaaataactgacttattttattttttaatacaatatta |
428 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||||||||||| |
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|
| T |
13716952 |
tctcaaaataactgagtcattttatttttcaatacaatatta |
13716993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 47577826 - 47577867
Alignment:
| Q |
387 |
tctcaaaataactgacttattttattttttaatacaatatta |
428 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
47577826 |
tctcaaaatgaatgacttattttattttttaatacaatatta |
47577867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 38664340 - 38664384
Alignment:
| Q |
384 |
gtgtctcaaaataactgacttattttattttttaatacaatatta |
428 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||||||||| |
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|
| T |
38664340 |
gtgtctcaaaataattgagtcattttattttttaatacaatatta |
38664384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 17342767 - 17342811
Alignment:
| Q |
384 |
gtgtctcaaaataactgacttattttattttttaatacaatatta |
428 |
Q |
| |
|
|||||||||||||||||| |||||| | |||| |||||||||||| |
|
|
| T |
17342767 |
gtgtctcaaaataactgagttatttcacttttcaatacaatatta |
17342811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 28923394 - 28923351
Alignment:
| Q |
385 |
tgtctcaaaataactgacttattttattttttaatacaatatta |
428 |
Q |
| |
|
||||| |||||||||||||||||| |||||| |||||||||||| |
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|
| T |
28923394 |
tgtcttaaaataactgacttatttcatttttcaatacaatatta |
28923351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 20383785 - 20383822
Alignment:
| Q |
391 |
aaaataactgacttattttattttttaatacaatatta |
428 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |
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|
| T |
20383785 |
aaaataactgacttatttcactttttaatacaatatta |
20383822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 10818559 - 10818603
Alignment:
| Q |
384 |
gtgtctcaaaataactgacttattttattttttaatacaatatta |
428 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||| ||||||| |
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|
| T |
10818559 |
gtgtctcaaaataactgagtcatttcattttttaatataatatta |
10818603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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