View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9339-LTR4-TNT-insertion-5 (Length: 769)
Name: F9339-LTR4-TNT-insertion-5
Description: F9339-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9339-LTR4-TNT-insertion-5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 725; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 12 - 760
Target Start/End: Original strand, 5620949 - 5621697
Alignment:
| Q |
12 |
tgcttttcttcttcccagatgtccatcttgactgtgaagggagaatatcaaagtttttaggaacacctgattcaattctctactcttatggactttccac |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620949 |
tgcttttcttcttcccagatgtccatcttgactgtgaagggagaatatcaaagtttttaggaacacctgattcaattctctactcttatggactttccac |
5621048 |
T |
|
| Q |
112 |
catgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataacttgtctttaagtatctactatggaatctttttca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621049 |
catgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataacttgtctttaagtatctactatggaatctttttca |
5621148 |
T |
|
| Q |
212 |
atttttcgtcagnnnnnnnngtccgatgacattatactggccattgataaccagataccacatgtagaactatattattggttttacttacctctttatt |
311 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621149 |
atttttcgtcagttttttttgtccgatgacattatactggccattgataaccagataccacatgtagaactatattattggttttacttacctctttatt |
5621248 |
T |
|
| Q |
312 |
aaaatggtgtaaagaatgatccaaattcatctccatcaactttatatttcaaaatttagcgaacttaagtcacttgtaccagctgatcaatggaggtgtt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621249 |
aaaatggtgtaaagaatgatccaaattcatctccatcaactttatatttcaaaatttagcgaacttaagtcacttgtaccagctgatcaatggaggtgtt |
5621348 |
T |
|
| Q |
412 |
gtttatataaatctggtgttttaagctggttcagttcatacataaatttatatcttttaacagggatgagggagtccactggggaatacagaatggcctt |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621349 |
gtttatataaatctggtgttttaagctggttcagttcatacataaatttatatcttttaacagggatgagggagtccactggggaatacagaatggcctt |
5621448 |
T |
|
| Q |
512 |
tatctttctagaagcacagtggtatattttaagcacaataacatggattctttaagagaaactttagagaacattacttccatatataagaggaccaaga |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621449 |
tatctttctagaagcacagtggtatattttaagcacaataacatggattctttaagagaaactttagagaacattacttccatatataagaggaccaaga |
5621548 |
T |
|
| Q |
612 |
atttgaggcgttatattgtcattgaagctctctaccaggtagatctcatcgttcatgcatgctgttatatttactttacacatctgtactgtgcttctga |
711 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621549 |
atttgaggcgttatattgtcattgaagctctctaccaggtagatctcatcgttcatgcatgctgttatatttactttacacatctgtactgtgcttctga |
5621648 |
T |
|
| Q |
712 |
tggagcgtgtacaacatttaggtataaaatcaaagagctataccaattg |
760 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621649 |
tggagcgtgtacaacatttaggtataaaatcaaagagctataccaattg |
5621697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 446 - 655
Target Start/End: Complemental strand, 30635427 - 30635218
Alignment:
| Q |
446 |
ttcatacataaatttatatcttttaacagggatgagggagtccactggggaatacagaatggcctttatctttctagaagcacagtggtatattttaagc |
545 |
Q |
| |
|
|||||| |||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |
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| T |
30635427 |
ttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaagc |
30635328 |
T |
|
| Q |
546 |
acaataacatggattctttaagagaaactttagagaacattacttccatatataagaggaccaagaatttgaggcgttatattgtcattgaagctctcta |
645 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||| ||||||| | |||||| |||||||||||||||||||||||||| | ||||||||||| |
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| T |
30635327 |
acaatgacatggattctttagaagaaactttagagaagcttacttctaagtataagcacaccaagaatttgaggcgttatattgttgtcgaagctctcta |
30635228 |
T |
|
| Q |
646 |
ccaggtagat |
655 |
Q |
| |
|
|||||||||| |
|
|
| T |
30635227 |
ccaggtagat |
30635218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 30635783 - 30635631
Alignment:
| Q |
27 |
cagatgtccatcttgactgtgaagggagaatatcaaagtttttaggaacacctgattcaattctctactcttatggactttccaccatgttcagtgctat |
126 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30635783 |
cagatgtacatcttgactgtgaagcaagaatagcaaaatttttaggaacgcctgattcaattctatactcttatggactttccaccatgttcagtgctat |
30635684 |
T |
|
| Q |
127 |
tcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataactt |
179 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
30635683 |
tcctgctttttctaaaaaaggagatataattgtggcgtaagtatgcataactt |
30635631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 8e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 446 - 655
Target Start/End: Complemental strand, 21424228 - 21424019
Alignment:
| Q |
446 |
ttcatacataaatttatatcttttaacagggatgagggagtccactggggaatacagaatggcctttatctttctagaagcacagtggtatattttaagc |
545 |
Q |
| |
|
|||||| |||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |
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| T |
21424228 |
ttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaagc |
21424129 |
T |
|
| Q |
546 |
acaataacatggattctttaagagaaactttagagaacattacttccatatataagaggaccaagaatttgaggcgttatattgtcattgaagctctcta |
645 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||||| ||| ||| | ||||||| |||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
21424128 |
acaatgacatggattctttagaagaaacattagagaagcttagttctaaatataagcacaccaagaatttgaggcgttatattgttgtcgaagctctcta |
21424029 |
T |
|
| Q |
646 |
ccaggtagat |
655 |
Q |
| |
|
|||||||||| |
|
|
| T |
21424028 |
ccaggtagat |
21424019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 21424584 - 21424432
Alignment:
| Q |
27 |
cagatgtccatcttgactgtgaagggagaatatcaaagtttttaggaacacctgattcaattctctactcttatggactttccaccatgttcagtgctat |
126 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
21424584 |
cagatgtacatcttgactgtgaagcaagaatagcaaaatttttacgaacgcctgattcaattctatactcttatggactttccaccatgttcagtgctat |
21424485 |
T |
|
| Q |
127 |
tcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataactt |
179 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
21424484 |
tcctgctttttctaaaaaaggagatataattgtggcgtaagtatgcataactt |
21424432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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