View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9339-LTR4-TNT-insertion-6 (Length: 562)
Name: F9339-LTR4-TNT-insertion-6
Description: F9339-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9339-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 96 - 321
Target Start/End: Original strand, 50272711 - 50272936
Alignment:
| Q |
96 |
tttaagttcttgttattcattattatgtgaccatgtttctatattttgctatttattaaataaaaagatacaaaaaggcaaaattattgctaaacatttt |
195 |
Q |
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| T |
50272711 |
tttaagttcttgttattcattattatgtgaccatgtttctatattttgctatttattaaataaaaagatacaaaaagtcaaaattattgctaaacatttt |
50272810 |
T |
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| Q |
196 |
tcatttattctaaataatttgtcaaaaattaacaatatcacattaaacaaggatatagaagcaatattttaaaaatcaaaccggtgctttcaatttatat |
295 |
Q |
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| T |
50272811 |
tcatttattctaaataatttgtcaaaaattaacaatatcacattaaacaaggatatagaagcaatattttaaaaatcaaaccggtgctttcaatttatat |
50272910 |
T |
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| Q |
296 |
tataaaaaatctcacctcaccatcca |
321 |
Q |
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|||||||||||||||||||||||||| |
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| T |
50272911 |
tataaaaaatctcacctcaccatcca |
50272936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 386 - 478
Target Start/End: Original strand, 50273001 - 50273093
Alignment:
| Q |
386 |
catttcatccctaggttgtatgtatgtccttgaaaccattctttgtccagagaaactcttgtgtgattgtaagtaagatttggacactctgac |
478 |
Q |
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| T |
50273001 |
catttcatccctaggttgtatgtatgtccttgaaaccattctttgtccagagaaactcttgtgtgattgtaagtaagatttggacactctgac |
50273093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 50272625 - 50272666
Alignment:
| Q |
10 |
gtgttcttgtgttttggcgcgtcaatagaaattccttttaag |
51 |
Q |
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| T |
50272625 |
gtgttcttgtgttttggcgcgtcaatagaaattccttttaag |
50272666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 512 - 552
Target Start/End: Original strand, 50273127 - 50273167
Alignment:
| Q |
512 |
ttctgtgaaaatgtttgtttgattctttagcaacttgaatt |
552 |
Q |
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| T |
50273127 |
ttctgtgaaaatgtttgtttgattctttagcaacttgaatt |
50273167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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