View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9339-LTR4-TNT-insertion-7 (Length: 850)
Name: F9339-LTR4-TNT-insertion-7
Description: F9339-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9339-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 597; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 9 - 711
Target Start/End: Complemental strand, 7727819 - 7727114
Alignment:
| Q |
9 |
ttcaaacctgggtggttatgagtgaaggtatcccatatacttggccctttgccaccttcatgtgctgcacctccatacttcatataacnnnnnnncaagt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
7727819 |
ttcaaacctgggtggttatgagtgaaggtatcccatatacttggccctttgccaccttcatgtgctgcaccttcatacttcatataacaaaaaaacaagt |
7727720 |
T |
|
| Q |
109 |
aagatccaaccaaacactttacataagtagatgcnnnnnnnntataaacaacataagacagaacaaaaacctggtaagctgaagaagctgttccaaacag |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727719 |
aagatccaaccaaacactttacataagtagatgcaaaaaaaatataaacaacataagacagaacaaaaacctggtaagctgaagaagctgttccaaacag |
7727620 |
T |
|
| Q |
209 |
gaaatcatgtggaaaactgctacggttaagagaaactgccgagttaaaaagagcaaagaaaattgttgcaagtagaagaagagaaaccttaaccgacatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727619 |
gaaatcatgtggaaaactgctacggttaagagaaactgccgagttaaaaagagcaaagaaaattgttgcaagtagaagaagagaaaccttaaccgacatt |
7727520 |
T |
|
| Q |
309 |
gttcaaagttttgattttgattcttaaacttttcaccccattaaaggaacttgttaaaagaaggttttttctttgtcttttagtaaaagtgaacccaaag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727519 |
gttcaaagttttgattttgattcttaaacttttcaccccattaaaggaacttgttaaaagaaggttttttctttgtcttttagtaaaagtgaacccaaag |
7727420 |
T |
|
| Q |
409 |
aaatt-ataaaaaatacaaaggaaaaaggact-agtttttattattttattgctttt-cttgaaaattgaaaagatgctatgattattgatgagggttaa |
505 |
Q |
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||||| ||||| ||||| |||| ||||| || |||||||||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
7727419 |
aaattgataaacaataccaagggcaaagggctcggtttttattactttaatgcttttcctggaaaattgaaaagatgctatgattattgatgagggttaa |
7727320 |
T |
|
| Q |
506 |
ataaaggttccatgcttaaattagtcaagtttcacacttgcttctttgcttcattcgagttgtgtatgagaaagttcaaaaaatgggataactttatggg |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727319 |
ataaaggttccatgcttaaattagtcaagtttcacacttgcttctttgcttcattcgagttgtgtatgagaaagttcaaaaaatgggataactttatggg |
7727220 |
T |
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| Q |
606 |
aagttagtgcaacttttgaagggagaaattaacttaaggaaattgcttatgtttgccttagaaattggtcaataatctaatcccttaagcaaatatttac |
705 |
Q |
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| T |
7727219 |
aagttagtgcaacttttgaagggagaaattaacttaaggaaattgcttatgtttgccttagaaattggtcaataatctaatcccttaagcaaatatttac |
7727120 |
T |
|
| Q |
706 |
ttcaaa |
711 |
Q |
| |
|
|||||| |
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| T |
7727119 |
ttcaaa |
7727114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 797 - 850
Target Start/End: Complemental strand, 7727028 - 7726975
Alignment:
| Q |
797 |
actttctttaagaagtagtttgtaactcgacacacgttggagtatataattgga |
850 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727028 |
actttttttaagaagtagtttgtaactcgacacacgttggagtatataattgga |
7726975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 24999271 - 24999217
Alignment:
| Q |
13 |
aacctgggtggttatgagtgaaggtatcccatatacttggccctttgccaccttc |
67 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
24999271 |
aacctgggtatttatgagtaaaggtatcccatatacttggtccttttccaccttc |
24999217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 8089504 - 8089429
Alignment:
| Q |
13 |
aacctgggtggttatgagtgaaggtatcccatatacttggccctttgccaccttcatgtgctgcacctccatactt |
88 |
Q |
| |
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||||||||| |||||||||||||| |||||||| ||||| ||| ||||||||||| ||| |||||| ||||||| |
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| T |
8089504 |
aacctgggtacttatgagtgaaggtgtcccatatgcttggacctctgccaccttcaaatgcagcaccttcatactt |
8089429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 29404594 - 29404536
Alignment:
| Q |
177 |
acctggtaagctgaagaagctgttccaaacaggaaatcatgtggaaaactgctacggtt |
235 |
Q |
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||||||||||||||||||||||||||||| | |||| ||| ||||||||| || ||||| |
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| T |
29404594 |
acctggtaagctgaagaagctgttccaaaaatgaaaccatctggaaaactactccggtt |
29404536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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