View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9339-LTR4-TNT-insertion-8 (Length: 252)
Name: F9339-LTR4-TNT-insertion-8
Description: F9339-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9339-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 6085038 - 6085271
Alignment:
| Q |
9 |
cacatgtgtcacttgattcaatgtaactgcatacctcctcataccttccatgtaatgttgactcagatttcacagcatcgcacaaatttaattgtgattc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6085038 |
cacatgtgtcacttgattcaatgtaactgcatacctcctcataccttccatgtaatgttgactcagatttcacagcatcgcacaaatttaattgtgattc |
6085137 |
T |
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| Q |
109 |
cttgtccaaatttagtatgcttaaaagcatttgaaattctgagaaataaattgggcagatcccacattctttcattgtgactgtcataaagttgttataa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6085138 |
cttgtccaaatttagtatgcttaaaagcatttgaaattctgagaaataaattgggcagatcccacattctttcattgtgactgtcataaagttgttataa |
6085237 |
T |
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| Q |
209 |
actccttccgctgaaacagtagaaacagagaatt |
242 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6085238 |
actccttccgctgaaacagtagaaacagagaatt |
6085271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 6060097 - 6060273
Alignment:
| Q |
9 |
cacatgtgtcacttgattcaatgtaactgcatacctcctcataccttccatgtaatgttgactcagatttcacagcatcgcacaaatttaattgtgattc |
108 |
Q |
| |
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||||||||||||||| |||| ||| |||||||| || |||||||||| | |||| ||||||| ||||||||||| || || | ||||||||||| || |
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| T |
6060097 |
cacatgtgtcacttggctcaaagtagctgcatacttcatcataccttctacttaattttgactctgatttcacagcttcacaaatatttaattgtgtgtc |
6060196 |
T |
|
| Q |
109 |
cttgtccaaatttagtatgcttaaaagcatttgaaattctgagaaataaattgggcagatcccacattctttcattg |
185 |
Q |
| |
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|| ||||||||||||| || || ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
6060197 |
ctcgtccaaatttagtgtggttgaaagcatatgaaattctgacaaataaattgggcagatcccacactctttcattg |
6060273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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