View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9340-LTR4-TNT-insertion-1 (Length: 367)
Name: F9340-LTR4-TNT-insertion-1
Description: F9340-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9340-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 7266859 - 7267208
Alignment:
| Q |
10 |
gttctgtcctagccccacctatgatgcaatatgtagtggttctggtttacctgctcctggaccttatcaaaacagtgtataactgatttgcttaaaagga |
109 |
Q |
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| T |
7266859 |
gttctgtcctagccccacctatgatgcaatatgtagtggttctggtttacctgctcctggaccttatcaaaacagtgtataactgatttgcttaaaagga |
7266958 |
T |
|
| Q |
110 |
tttgattccaaatactagtttaagttaaagggtcaagtgcagtgcaacgttgtaacatttgttcaaagactgagattgtaatacatttgttcatgtttat |
209 |
Q |
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| T |
7266959 |
tttgattccaaatactagtttaagttaaagggtcaagtgcagtgcaacgttgtaacatttgttcaaagactgagattgtaatacatttgttcatgtttat |
7267058 |
T |
|
| Q |
210 |
gacaaagtatgaagtgggtaaaatatgtttccttgattttgaatgtaacagacactgcacttttacacacttcattttgaagctaatctttatcacatta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7267059 |
gacaaagtatgaagtgggtaaaatatgtttccttgattttgaatgtaacagacactgcacttttacacacttcattttgaagctaatctttatcacatta |
7267158 |
T |
|
| Q |
310 |
tctaatttaccatgtcttttatcatattaccatatggtctaatgatatta |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7267159 |
tctaatttaccatgtcttttatcatattaccatatggtctaatgatatta |
7267208 |
T |
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