View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9340-LTR4-TNT-insertion-2 (Length: 177)
Name: F9340-LTR4-TNT-insertion-2
Description: F9340-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9340-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 27835377 - 27835536
Alignment:
| Q |
9 |
aaatataaatattgaggaaagttatggcattaaaccagatgaagaaatgtatcaccttaataatgatgatgttaataattatgttggttgtgactcgagt |
108 |
Q |
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| T |
27835377 |
aaatataaatattgaggaaagttatggcattaaaccagatgaagaaatgtatcaccttaataatgatgatgttaataattatgttggttgtgactcgagt |
27835476 |
T |
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| Q |
109 |
atgtcacgcaactcgatataagggtcctaaagatttttgtgttcattgtattaacaattg |
168 |
Q |
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| T |
27835477 |
atgtcacgcaactcgatataagggtcctaaagatttttgtgttcattgtattaacaattg |
27835536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 30927727 - 30927792
Alignment:
| Q |
45 |
agatgaagaaatgtatcaccttaataatgatgatgttaataattatgttggttgtgactcgagtat |
110 |
Q |
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| T |
30927727 |
agatgaagaaaggtatcaccataataatgatgatgttaatgattatctttgttgtgaatcaagtat |
30927792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 30920669 - 30920734
Alignment:
| Q |
45 |
agatgaagaaatgtatcaccttaataatgatgatgttaataattatgttggttgtgactcgagtat |
110 |
Q |
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| T |
30920669 |
agatgaagaaaggtatcaccgtaataatgatgatgttaatggttatctttgttgtgaatcaagtat |
30920734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 11990608 - 11990495
Alignment:
| Q |
9 |
aaatataaatattgaggaaagttatggcattaaaccagatgaagaaatgtatcaccttaataatgatgatgttaataattatgttggttgtgactcgagt |
108 |
Q |
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|||||||| |||||| | ||| |||||| | ||| ||||||||||| ||||||||||||| ||||||||| |||| |||||| | |||||||||| ||| |
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| T |
11990608 |
aaatataagcattgagaagagtcatggcaatgaacaagatgaagaaaagtatcaccttaatgatgatgatggtaatgattatgatcgttgtgactcaagt |
11990509 |
T |
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| Q |
109 |
atgtcacgcaactc |
122 |
Q |
| |
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||| | ||||||| |
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| T |
11990508 |
ttgtgatgcaactc |
11990495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 3389159 - 3389079
Alignment:
| Q |
30 |
ttatggcattaaaccagatgaagaaatgtatcaccttaataatgatgatgttaataattatgttggttgtgactcgagtat |
110 |
Q |
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|||||||| | ||| ||||||||||| |||||||||| || ||||||||| |||| |||||||| |||||||||| ||||| |
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| T |
3389159 |
ttatggcagtgaacaagatgaagaaaagtatcaccttgatgatgatgatggtaatgattatgtttgttgtgactcaagtat |
3389079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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