View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9340-LTR4-TNT-insertion-3 (Length: 841)
Name: F9340-LTR4-TNT-insertion-3
Description: F9340-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9340-LTR4-TNT-insertion-3 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 820; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 10 - 841
Target Start/End: Original strand, 17339897 - 17340728
Alignment:
| Q |
10 |
gcactgaaagacagttcggcaggctgtacatactagctagggagagaaaaattaaagttaaggattgaaaatttcagtgatggtttggagattactataa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17339897 |
gcactgaaagacagttcggcaggctgtacatactagctagggagagaaaaattaaagttaaggattgaaaatttcagtgatggtttggagattactataa |
17339996 |
T |
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| Q |
110 |
ccaaagtcaatcattctcggaggaaagtgctaaacggttatcatatttagtgtgccttctgcagtggggaagagcaaagtttgcagcattcgtttttggc |
209 |
Q |
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| T |
17339997 |
ccaaagtcaatcattctcggaggaaagtgctaaacggttatcatatttagtgtgccttctgcagtggggaagagcaaagtttgcagcattcgtttttggc |
17340096 |
T |
|
| Q |
210 |
tgccctgctgtgttatttgtgtggaattcaatcttgcagtggctccgtgtctcaacagcttttgcagctaaaggccgggagcatttagagcaatttacag |
309 |
Q |
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| T |
17340097 |
tgccctgctgtgttatttgtgtggaattcaatcttgcagtggctccgtgtttcaacagcttttgcagctaaaggccgggagcatttagagcaatttacag |
17340196 |
T |
|
| Q |
310 |
gtttattgtactatggaaaggtattcagaatgtgttttactttaatttgtttgcgagtgtgtggtcgctttggaaagctaggaacaagtatcttgtttag |
409 |
Q |
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| T |
17340197 |
gtttattgtactatggaaaggtattcagaatgtgttttactttaatttgtttgcgagtgtgtggtcgctttggaaagctaggaacaagtatcttgtttag |
17340296 |
T |
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| Q |
410 |
ggtgctattctgctcctggtctgctttggagttttagtttagtttgagtgtcatttgttctcaattctggtgtgtttaaatgtatcagactttgtttgcc |
509 |
Q |
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| T |
17340297 |
ggtgctattctgctcctggtctgctttggagttttagtttagtttgagtgtcatttgttctcaattctggtgtgtttaaatgtatcagactttgtttgcc |
17340396 |
T |
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| Q |
510 |
tctgttttaggcttttgcacttagtcaagattatatcaacaacatattttgcttctcctaaaaaatattgtggtgtgtaatggaaaatgatcgacgaatg |
609 |
Q |
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| T |
17340397 |
tctgttttaggcttttgcacttagtcaagattatatcaacaacatattttgcttctcctaaaaaatattgtggtgtgtaatggaaaatgatcgacgaatg |
17340496 |
T |
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| Q |
610 |
attgtataaattggcacatataatcacatattcaaaaacatatctagatatacattcttttttcatataagcaaacaaatgaacttacctttactatgtc |
709 |
Q |
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| T |
17340497 |
attgtataaattggcacatataatcacatattcaaaaacatatctagatatacattcttttttcatataagcaaacaaatgaacttacctttactatgtc |
17340596 |
T |
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| Q |
710 |
caaaaattgcagggattgcacgatttgattcacggaaatgttgaacaaccgcgtgtaactcatccacctctccccaatagttaccatactggaacgaacc |
809 |
Q |
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| T |
17340597 |
caaaaattgcagggattgcacgatttgattcacggaaatgttgaacaaccgcgtgtaattcatccacctctccccaatagttaccatactggaacgaacc |
17340696 |
T |
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| Q |
810 |
ttcgctttccctggaaagtaaacccacaagct |
841 |
Q |
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| T |
17340697 |
ttcgctttccctggaaggtaaacccacaagct |
17340728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 605 - 792
Target Start/End: Original strand, 17292818 - 17293005
Alignment:
| Q |
605 |
gaatgattgtataaattggcacatataatcacatattcaaaaacatatctagatatacattcttttttcatataagcaaacaaatgaacttacctttact |
704 |
Q |
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| T |
17292818 |
gaatgattgtataaattggtacatataatcatatatccaaaagcatagatagatatacctttttatttcatataagcaaacaaatcaagatacctttact |
17292917 |
T |
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| Q |
705 |
atgtccaaaaattgcagggattgcacgatttgattcacggaaatgttgaacaaccgcgtgtaactcatccacctctccccaatagtta |
792 |
Q |
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| T |
17292918 |
atgtccgacaattgcacggataacacgatttgattcacggaaatgttgagcaacagcgcgtaaatcatccacctcttcccaaaagtta |
17293005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 608 - 821
Target Start/End: Original strand, 17299550 - 17299763
Alignment:
| Q |
608 |
tgattgtataaattggcacatataatcacatattcaaaaacatatctagatatacattcttttttcatataagcaaacaaatgaacttacctttactatg |
707 |
Q |
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| T |
17299550 |
tgattgtataacttggcaaatataatcatatatccaaaagtatatatagatatacctttttcttccatataagcaaacaaatcaagatacctttactgtg |
17299649 |
T |
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| Q |
708 |
tccaaaaattgcagggattgcacgatttgattcacggaaatgttgaacaaccgcgtgtaactcatccacctctccccaatagttaccatactggaacgaa |
807 |
Q |
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||| | ||||||| ||||| |||||||||||||||| ||||||||| |||| || ||||| |||||||||||| || | ||||||| ||| |||||| |
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| T |
17299650 |
tccgacaattgcacggattacacgatttgattcacgaaaatgttgagcaacagcatgtaaatcatccacctctgtccgttggttaccaaacttaaacgaa |
17299749 |
T |
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| Q |
808 |
ccttcgctttccct |
821 |
Q |
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| T |
17299750 |
ccttcgctttccct |
17299763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 674 - 821
Target Start/End: Original strand, 17315296 - 17315443
Alignment:
| Q |
674 |
atataagcaaacaaatgaacttacctttactatgtccaaaaattgcagggattgcacgatttgattcacggaaatgttgaacaaccgcgtgtaactcatc |
773 |
Q |
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||||||||||||||| | |||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |||| || ||||| || || |
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| T |
17315296 |
atataagcaaacaaaccagtatacctttactatgtccaacaattgcacggatcacacgatttgattcacggaaatgttgagcaacagcatgtaaatcgtc |
17315395 |
T |
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| Q |
774 |
cacctctccccaatagttaccatactggaacgaaccttcgctttccct |
821 |
Q |
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||| ||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
17315396 |
cacttctttccaatagttaccgtactcaaacgaaccttcgctttccct |
17315443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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