View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9340-LTR4-TNT-insertion-6 (Length: 339)
Name: F9340-LTR4-TNT-insertion-6
Description: F9340-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9340-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 26031277 - 26031598
Alignment:
| Q |
10 |
cagatcgcgtacacaaacctttgtttaaaaccttgattactacactcctaatttgattttcttcatttgtttatatggttttgtgattgaatttatgatt |
109 |
Q |
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| T |
26031277 |
cagatcgcgtacacaaacctttgtttaaaaccttgattactacactcctaatttgattttcttcatttgtttatatggttttgtgattgaatttatgatt |
26031376 |
T |
|
| Q |
110 |
agaattgtcaaaattgctgttatctaggcctattcaccacttggatcacaagatggtgggagagatctcatccatgatcaaacggttgataggatagcca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26031377 |
agaattgtcaaaattgctgttatctaggcctattcaccacttggatcacaagatggtgggagagatctcatccatgatcaaacggttgataggatagcca |
26031476 |
T |
|
| Q |
210 |
agaagctgtacaagagtccagggcaagtgttggtgaagtgggccatgcagagagggacaagtgtcattcccaaatcaaccaacccaaataggatcaaaga |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26031477 |
agaagctgaacaagagtccagggcaagtgttggtgaagtgggccatgcagagagggacaagtgtcattcccaaatcaaccaacccaaataggatcaaaga |
26031576 |
T |
|
| Q |
310 |
gaatgtggttgtcttcaattgg |
331 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
26031577 |
gaatgtggttgtcttcaattgg |
26031598 |
T |
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