View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9340-LTR4-TNT-insertion-7 (Length: 599)
Name: F9340-LTR4-TNT-insertion-7
Description: F9340-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9340-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 589
Target Start/End: Complemental strand, 46633646 - 46633065
Alignment:
| Q |
8 |
cactcatgataaaatcatgaaaatttctgtcaacaaaatgtaccagtataggtactttagtgttttgtagtgcacttgttagtagttagcttcaactata |
107 |
Q |
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| T |
46633646 |
cactcatgataaaatcatgaaaatttctgtcaacaaaatgtaccagtataggtactttagtgttttgtagtgcacttgttagtagttagcttcaactata |
46633547 |
T |
|
| Q |
108 |
ggtactaagtattgacattttgacatcaattaacatgtggatgtggtccttgccctcttgaagaatatttgtcaactagtgatggactaagtaaaccatc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46633546 |
ggtactaagtattgacattttgacatcaattaacatgtggatgtggtccttgccctcttgaagaatatttgtcaactagtgatggactaagtaaatcatc |
46633447 |
T |
|
| Q |
208 |
aaagaaaataaacaactctttagtaaaacagtgctgtcctgaaatatatctaacttggtaacatttatacatgacaaaaaaccattacaaatccttcaca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46633446 |
aaagaaaataaacaactctttagtaaaacagtgctgttctgaaatatatctaacttggtaacatttatacatgacaaaaaaccattacaaatccttcaca |
46633347 |
T |
|
| Q |
308 |
caaatgtaattcacagacagtacaaacaatgaatataagaagnnnnnnnnnctctacagaagttgtactttcaataaatcccagcactctatatcataaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46633346 |
caaatgtaattcacagacagtacaaacaatgaatataagaagaaaaaaaaactctacagaagttgtactttcaataaatcccagcactctatatcataaa |
46633247 |
T |
|
| Q |
408 |
aaacagaacttatattttctttggaactctaaaaggaaaagaagaactcaggaaccttaacacctcaatgcttacgtttttgttggtctagcaatgtgac |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46633246 |
aaacagaacttatattttctttggaactctaaaaggaaaagaagaactcagaaaccttaacacctcaatgcttacgtttttgttggtcttgcaatgtgac |
46633147 |
T |
|
| Q |
508 |
ttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgcaatcaaaacaatgtaacaaagcaatta |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46633146 |
ttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgcaatcaaaacaatgtaacaaagcaatta |
46633065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 359 - 436
Target Start/End: Complemental strand, 7718136 - 7718059
Alignment:
| Q |
359 |
ctctacagaagttgtactttcaataaatcccagcactctatatcataaaaaacagaacttatattttctttggaactc |
436 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||||||||| |||||| |
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| T |
7718136 |
ctctacagaagttgtactttcaatatatccgagcactctatattataaaaaacagaacttgtattttcttttgaactc |
7718059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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