View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9340-LTR4-TNT-insertion-9 (Length: 238)
Name: F9340-LTR4-TNT-insertion-9
Description: F9340-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9340-LTR4-TNT-insertion-9 |
 | |
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| [»] scaffold0891 (1 HSPs) |
| | |
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| [»] scaffold1267 (1 HSPs) |
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| [»] scaffold1268 (1 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 35776069 - 35776291
Alignment:
| Q |
6 |
caagtaactggaatatgtggtgaagaagtgttgagctttttcacaagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35776069 |
caagtaactggaatatgtggtgaagaagtgttgagctttttcacaagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaa |
35776168 |
T |
|
| Q |
106 |
catcttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgattt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35776169 |
catcttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgattt |
35776268 |
T |
|
| Q |
206 |
tatcaaacgtttgtggttgaatt |
228 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
35776269 |
tatcaaacgtttgtggttgaatt |
35776291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 35854384 - 35854606
Alignment:
| Q |
6 |
caagtaactggaatatgtggtgaagaagtgttgagctttttcacaagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaa |
105 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||||| || | ||||||||| |||||||| | | | ||||||||| |||| |||||||||| | || |
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|
| T |
35854384 |
caagtaactggaatatgaggtgatgaggtgttaagcttattgataagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaa |
35854483 |
T |
|
| Q |
106 |
catcttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgattt |
205 |
Q |
| |
|
|||||||||||||| |||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
35854484 |
tatcttgtgttgcatctttatctgactctggcaaaccatcaggtatggtctcaaattgaaaatctggtagaccattcacaaagtcttgtccaagagattt |
35854583 |
T |
|
| Q |
206 |
tatcaaacgtttgtggttgaatt |
228 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
35854584 |
tatcaaacgtttgtggttgaatt |
35854606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 35868993 - 35869215
Alignment:
| Q |
6 |
caagtaactggaatatgtggtgaagaagtgttgagctttttcacaagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaa |
105 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||| | | | ||||||||| |||| |||||||||| | || |
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|
| T |
35868993 |
caagtaactggaatatgaggtgatgaagtgttgagcttaatcacaagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaa |
35869092 |
T |
|
| Q |
106 |
catcttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgattt |
205 |
Q |
| |
|
|||||||||||||| |||||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||| |
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|
| T |
35869093 |
tatcttgtgttgcatctttatctgactctggcaaaccatcaggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagattt |
35869192 |
T |
|
| Q |
206 |
tatcaaacgtttgtggttgaatt |
228 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35869193 |
tatcaaacgtttgtggttgaatt |
35869215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 35759644 - 35759866
Alignment:
| Q |
6 |
caagtaactggaatatgtggtgaagaagtgttgagctttttcacaagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaa |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| || | ||||||||| |||||||| | | | ||||||||| |||| |||||||||| | || |
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|
| T |
35759644 |
caagtaactggaatatgtggtgatgaagtattaagcttattgagaagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaa |
35759743 |
T |
|
| Q |
106 |
catcttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgattt |
205 |
Q |
| |
|
|||||||||||||| ||||| | | || |||||||| ||||| |||||||||||||||||||||||||| |||| | | ||||||||||| || || |
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|
| T |
35759744 |
tatcttgtgttgcatctttataaaaaaaaggcaaaccatcaggtatggtctcaaattgaaaatctggtagaccattcatataatcttgtccaagtgagtt |
35759843 |
T |
|
| Q |
206 |
tatcaaacgtttgtggttgaatt |
228 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
35759844 |
taccaaacgtttgtggttgaatt |
35759866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 35737923 - 35738041
Alignment:
| Q |
110 |
ttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgattttatc |
209 |
Q |
| |
|
|||||||||||| | ||||||| ||| |||||||| |||||||||||||| |||||||||| ||||||| | |||||| |||||||| ||||||||| |
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|
| T |
35737923 |
ttgtgttgcattctcatcagatggtggcaaaccatctggtatagtctcaaacctaaaatctggttgaccctttaaaaagtcatgtccaagagattttatc |
35738022 |
T |
|
| Q |
210 |
aaacgtttgtggttgaatt |
228 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
35738023 |
aaacgtttgtggttgaatt |
35738041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 35842064 - 35842098
Alignment:
| Q |
194 |
tccaagcgattttatcaaacgtttgtggttgaatt |
228 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
35842064 |
tccaagagattttatcaaacgtttgtggttgaatt |
35842098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 191 - 5
Alignment:
| Q |
42 |
tttttcacaagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaacatcttgtgttgcatttttatcagattctggtaaac |
141 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||| ||| ||||||||||||||||||||| || |||||||||||||| |||||| ||||||||||||| |
|
|
| T |
191 |
tttttgacaagctctttcaaaggagcataaaagttatttttacttgcttcacacaacggtataatatcttgtgttgcatctttatctgattctggtaaac |
92 |
T |
|
| Q |
142 |
catcgggtatagtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgattttatcaaacgtttgtggttgaatt |
228 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |
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|
| T |
91 |
catcaggtatggtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagattttatcaaacgtttgtggttgaatt |
5 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 197 - 16
Alignment:
| Q |
6 |
caagtaactggaatatgtggtgaagaagtgttgagctttttcacaagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaa |
105 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||| | | | ||||||||| |||| |||||||||| | || |
|
|
| T |
197 |
caagtaactggaatatgaggtgatgaagtgttgagcttaatcacaagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaa |
98 |
T |
|
| Q |
106 |
catcttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaa |
187 |
Q |
| |
|
|||||||||||||| |||||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
97 |
tatcttgtgttgcatctttatctgactctggcaaaccatcaggtatggtctcaaattgaaaatctggtagacccttcacaaa |
16 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 197 - 16
Alignment:
| Q |
6 |
caagtaactggaatatgtggtgaagaagtgttgagctttttcacaagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaa |
105 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||||| || | ||||||||| |||||||| | | | ||||||||| |||| |||||||||| | || |
|
|
| T |
197 |
caagtaactggaatatgaggtgatgatgtgtttagcttatttataagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaa |
98 |
T |
|
| Q |
106 |
catcttgtgttgcatttttatcagattctggtaaaccatcgggtatagtctcaaattgaaaatctggtagacccttcacaaa |
187 |
Q |
| |
|
|||||||||||||| |||||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
97 |
tatcttgtgttgcatctttatctgactctggcaaaccatcaggtatggtctcaaattgaaaatctggtagacccttcacaaa |
16 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 2027 - 1952
Alignment:
| Q |
153 |
gtctcaaattgaaaatctggtagacccttcacaaagtcttgtccaagcgattttatcaaacgtttgtggttgaatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |
|
|
| T |
2027 |
gtctcaaattgaaaatctggtagacccttcacaaactcagctccaagagattttatcaaacgtttgtggttgaatt |
1952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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