View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9341-LTR4-TNT-insertion-1 (Length: 213)
Name: F9341-LTR4-TNT-insertion-1
Description: F9341-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9341-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 52092574 - 52092771
Alignment:
| Q |
8 |
gtcactacaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaacacacacctcacg |
107 |
Q |
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| T |
52092574 |
gtcactacaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaacacacacctcacg |
52092673 |
T |
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| Q |
108 |
acaacctcgtatatttatctctctcaatcgtgtgcagtttttactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaattg |
205 |
Q |
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| T |
52092674 |
acaacctcgtatatttatctctctcaatcgtgtgcagtttttactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaattg |
52092771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 52082387 - 52082575
Alignment:
| Q |
14 |
acaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaacacacacctcacgacaacc |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| | ||||||||||||||||| ||||||| | | ||||| | |
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| T |
52082387 |
acaaaaatgagagggagccataat----ttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatc |
52082482 |
T |
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| Q |
114 |
tcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaattg |
205 |
Q |
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| T |
52082483 |
ccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctctgtgatatgatcacaccgttccaagtccaattg |
52082575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 514931 - 514859
Alignment:
| Q |
108 |
acaacctcgtatatttatctctctcaatcgtgtgcagttttt-actacgtgcctcactcctttctctgtgata |
179 |
Q |
| |
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|||||||| || ||| |||||||||| ||||||||||||||| || || ||| ||||||| ||||||||||| |
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| T |
514931 |
acaacctcttaaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgata |
514859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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