View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9343-LTR4-TNT-insertion-1 (Length: 182)
Name: F9343-LTR4-TNT-insertion-1
Description: F9343-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9343-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 41359549 - 41359385
Alignment:
| Q |
10 |
ccatcacctcctctctctttcaccacccccggtaacactcaataacagcaatagtgatataatacaaaacgtttcaaatgcaacgcatttcacacagata |
109 |
Q |
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| T |
41359549 |
ccatcacctcctctctctttcaccacccccggtaacactcaataacagcaatagtgatataatacaaaacgtttcaaatgcaacgcatttcacacagata |
41359450 |
T |
|
| Q |
110 |
ttattactagggtttcaaatcggcaaaataggacaatctagattttaatttgaaattttatatta |
174 |
Q |
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| T |
41359449 |
ttattactagggtttcaaatcggcaaaataggacaatctagattttaatttgaaattttatatta |
41359385 |
T |
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