View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9343-LTR4-TNT-insertion-10 (Length: 136)
Name: F9343-LTR4-TNT-insertion-10
Description: F9343-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9343-LTR4-TNT-insertion-10 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 40011052 - 40011169
Alignment:
| Q |
9 |
tacattacaaggtgctctgtgcttgatctgattatacaggcggataaggcaatgagtgatttgagaaacactaacttaaggctgaagaaaactatcactg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40011052 |
tacattacaaggtgctctgtgcttgatctgattatacaggcggataaggcaatgagtgatttgagaaacactaacttaaggctgaagaaaactatcactg |
40011151 |
T |
|
| Q |
109 |
aggtaactgacatgatta |
126 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
40011152 |
aggtaactgacatgatta |
40011169 |
T |
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