View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9343-LTR4-TNT-insertion-2 (Length: 293)
Name: F9343-LTR4-TNT-insertion-2
Description: F9343-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9343-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 13886657 - 13886384
Alignment:
| Q |
10 |
tgtttctgttccaagtcaactgcaagcaacagaagatttgataagccctagattcgggtatgtatctgcatcatacataaatgtaatactgtttactgaa |
109 |
Q |
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| T |
13886657 |
tgtttctgttccaagtcaactgcaagcaacagaagatttgataagccctagattcgggtatgtatctgcatcatacataaatgtaatactgtttactgaa |
13886558 |
T |
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| Q |
110 |
ttcgacagtatcttattgttatgatctcttgcagcggtttttcagagtttgagataacgtactcaaatctattggagtatatttctgtcaatctgagtgc |
209 |
Q |
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| T |
13886557 |
ttcgacagtatcttattgttatgatctcttgcagcggtttttcagagtttgagataacgtactcaaatctattggagtatatttctgtcaatctgagtgc |
13886458 |
T |
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| Q |
210 |
acaatttggaagtatatttctgtctccaatgttgatgcaatttggagaaccaatgtggagtgaacttacaatta |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886457 |
acaatttggaagtatatttctgtctccaatgttgatgcaatttggagaaccaatgtggagtgaacttacaatta |
13886384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 14026782 - 14026509
Alignment:
| Q |
10 |
tgtttctgttccaagtcaactgcaagcaacagaagatttgataagccctagattcgggtatgtatctgcatcatacataaatgtaatactgtttactgaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14026782 |
tgtttctgttccaagtcaactgcaagcaacagaagatttgataagccctagattcgggtatgtatctgcatcatacataaatgtaatactgtttactgaa |
14026683 |
T |
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| Q |
110 |
ttcgacagtatcttattgttatgatctcttgcagcggtttttcagagtttgagataacgtactcaaatctattggagtatatttctgtcaatctgagtgc |
209 |
Q |
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| T |
14026682 |
ttcgacagtatcttattgttatgatctcttgcagcggtttttcagagtttgagataacgtactcaaatctattggagtatatttctgtcaatctgagtgc |
14026583 |
T |
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| Q |
210 |
acaatttggaagtatatttctgtctccaatgttgatgcaatttggagaaccaatgtggagtgaacttacaatta |
283 |
Q |
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| T |
14026582 |
acaatttggaagtatatttctgtctccaatgttgatgcaatttggagaaccaatgtggagtgaacttacaatta |
14026509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 118 - 281
Target Start/End: Complemental strand, 7686758 - 7686595
Alignment:
| Q |
118 |
tatcttattgttatgatctcttgcagcggtttttcagagtttgagataacgtactcaaatctattggagtatatttctgtcaatctgagtgcacaatttg |
217 |
Q |
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|||||||| |||||||||||||||||||| |||||| |||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||| || |
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| T |
7686758 |
tatcttatcattatgatctcttgcagcggtatttcagggtttaagataacgtattcaaatctatcagagaatatttctgtcaatctgagtgcacaatatg |
7686659 |
T |
|
| Q |
218 |
gaagtatatttctgtctccaatgttgatgcaatttggagaaccaatgtggagtgaacttacaat |
281 |
Q |
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| T |
7686658 |
gaagtatatttctgtctccaatgttgatgcaatttggagaaccaaagtggagtgaacttacaat |
7686595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 7686899 - 7686829
Alignment:
| Q |
13 |
ttctgttccaagtcaactgcaagcaacagaagatttgataagccctagattcgggtatgtatctgcatcat |
83 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7686899 |
ttctgttccaagtcaacttcaagcaacggaagatttgataagccctagatttgggtatgtatctgcatcat |
7686829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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