View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9343-LTR4-TNT-insertion-4 (Length: 257)
Name: F9343-LTR4-TNT-insertion-4
Description: F9343-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9343-LTR4-TNT-insertion-4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 13909932 - 13910153
Alignment:
| Q |
10 |
tgataggaccagaagctttgttctttcaacaaggtgcttatcactccatgctcaagaagctagttcaagcctcttttttaccttccacacttaaaaactc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13909932 |
tgataggaccagaagctttgttctttcaacaaggtgcttatcactccatgctcaagaagctagttcaagcctcttttttaccttccacacttaaaaactc |
13910031 |
T |
|
| Q |
110 |
tgtctctcatgttgaccaaattgtacaaaaattggttccaacttgggctaatagaaccatcaacaccttgcaagagatgaaaaaggttcattcattataa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13910032 |
tgtctctcatgttgaccaaattgtacaaaaattggttccaacttgggctaatagaaccatcaacaccttgcaagagatgaaaaaggttcattcattataa |
13910131 |
T |
|
| Q |
210 |
ttacacattctttatgacatta |
231 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
13910132 |
ttacacattctttattacatta |
13910153 |
T |
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