View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9343-LTR4-TNT-insertion-5 (Length: 473)
Name: F9343-LTR4-TNT-insertion-5
Description: F9343-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9343-LTR4-TNT-insertion-5 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Complemental strand, 11786727 - 11786263
Alignment:
| Q |
8 |
ccagcttcagtaggatgagtagagtcaaataacaaatattcagaaggattatcacacaaatcataatcttttacttctcttttacctccacagctgtgat |
107 |
Q |
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| T |
11786727 |
ccagcttcagtaggatgagtagagtcaaataacaaatattcagaaggattatcacacaaatcataatcttttacttctcttttacctccacagctgtgat |
11786628 |
T |
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| Q |
108 |
atccattgtaagggccactaccacagcatgctactcctccttctttcaaaccttttcatcatcaaattaagtcacaaattttagaattagataaatgtaa |
207 |
Q |
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| T |
11786627 |
atccattgtaagggccactaccacagcatgctactcctccttctttcaaaccttttcatcatcaaattaagtcacaaattttagaattagataaatgtaa |
11786528 |
T |
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| Q |
208 |
agaaactatagcagtgtgatatttgaatgctattacaataactttttcgtatatatatacctatattacaaaactcatcatttaattgaaaactaatatc |
307 |
Q |
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| T |
11786527 |
agaaactatagcagtgtgatatttgaatgctattacaataactttttcgtatatatatacctatattacaaaactcatcatttaattgaaaactaatatc |
11786428 |
T |
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| Q |
308 |
atgtaatttgatatgcctttaggatataacctatttcatggtaagtcaatttcataatacaaatatgcaggtcaccaaaggaataacnnnnnnnnnnnnn |
407 |
Q |
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| T |
11786427 |
atgtaatttgatatgcctttaggatataacctatttcatggtaagtcaatttcataatacaaatatgcaggtcaccaaaggaataac-aaaaaaaaaaaa |
11786329 |
T |
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| Q |
408 |
nnntttatatgctttgtcaattttactttctcaatcaatcaaaactgtcaaatcattcaaatgttt |
473 |
Q |
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| T |
11786328 |
agatttatatgcgttgtcaattttacattctcaatcaatcataactgtcaaatcattcgaatgttt |
11786263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 11772833 - 11772667
Alignment:
| Q |
7 |
accagcttcagtaggatgagtagagtcaaataacaaatattcagaaggattatcacacaaatcataatcttttacttctcttttacctccacagctgtga |
106 |
Q |
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| T |
11772833 |
accagtttcagtaggatgagtagagtcaaagaacaaatattcagaaggattctcacacaagtcataacctttcactagtcttttatctccacaactgtaa |
11772734 |
T |
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| Q |
107 |
tatccattgtaagggccactaccacagcatgctactcctccttctttcaaaccttttcatcatcaaa |
173 |
Q |
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| T |
11772733 |
tttccattgtaagggccactaccacagcatgccaccgctccttctttcaaacctttatatcatcaaa |
11772667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 11780642 - 11780438
Alignment:
| Q |
32 |
tcaaataacaaatattcagaaggattatcacacaaatcataatcttttacttctcttttacctccacagctgtgatatccattgtaagggccactaccac |
131 |
Q |
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||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||| |||||| | ||||| ||||| |||| |
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| T |
11780642 |
tcaaagaacaaatattcagaaggattgtcacacaagtcataatctttcacttctcttttacctccacaactgaaatatcctctataaggtccactgccac |
11780543 |
T |
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| Q |
132 |
agcatgctactcctccttctttcaaaccttttcatcatcaaattaagtcacaaattttagaattagataa--atgtaaagaaactatagcagtgtgatat |
229 |
Q |
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| T |
11780542 |
aacatgccactcctgcttctttcaaaccttttcatcatcaaattaagccaaaaaatttagaaccaaataaatatataaagaaactataaccgtgtaatat |
11780443 |
T |
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| Q |
230 |
ttgaa |
234 |
Q |
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| T |
11780442 |
ttgaa |
11780438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 11765811 - 11765683
Alignment:
| Q |
32 |
tcaaataacaaatattcagaaggattatcacacaaatcataatcttttacttctcttttacctccacagctgtgatatccattgtaagggccactaccac |
131 |
Q |
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| T |
11765811 |
tcaaaaaacacatattcagaaggattcttacacaagtcataatctttcacttctcttttacctccacaactgtaatatccattgtaagggccactaccac |
11765712 |
T |
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| Q |
132 |
agcatgctactcctccttctttcaaacct |
160 |
Q |
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| T |
11765711 |
agcatgccactcctccttctttcaaacct |
11765683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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