View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9343-LTR4-TNT-insertion-9 (Length: 346)
Name: F9343-LTR4-TNT-insertion-9
Description: F9343-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9343-LTR4-TNT-insertion-9 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 2411210 - 2411539
Alignment:
| Q |
7 |
agaaagatgaacaaagaataagaataaagacgaatgcaaagatggatgaagctatttcattttaataagtgattacataagttttttgggtgctatgata |
106 |
Q |
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| T |
2411210 |
agaaagatgaacaaagaaaaagaataaagacgaatgcaaagatggatgaagctatttcattttaataagtgattacataagttttttgggtgctatgata |
2411309 |
T |
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| Q |
107 |
caccatgtagtgtaaaacatagtaaagatgttggattacatttaagattactaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411310 |
caccatgtagtgtaaaacatagtaaagatgttggattacatttaagattactaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcc |
2411409 |
T |
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| Q |
207 |
cttcatagtccaccaccatctgtttttgatctggtagacatccctttgttgggtagagatgagatagtatctacactttgatagcagatttctgttttta |
306 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411410 |
cttcatagtccaccaccatctgtttttgatttggtagacatccctttgttgggtagagatgagatagtatctacactttgatagcagatttctgttttta |
2411509 |
T |
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| Q |
307 |
accttgctatcaaagtcaaatctaacatta |
336 |
Q |
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| T |
2411510 |
accttgctatcaaagtcaaatctaacatta |
2411539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 39 - 336
Target Start/End: Original strand, 13623 - 13919
Alignment:
| Q |
39 |
aatgcaaagatggatgaagctatttcattttaataagtgattacata-agttttttgggtgctatgatacaccatgtagtgtaaaacatagtaaagatgt |
137 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
13623 |
aatgcaaagatggatgaagttgtttcattttaataagtgattacatttagttttttgggtg-tatgatacaccatgtagtgtaaaacatcgtaaagatgt |
13721 |
T |
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| Q |
138 |
tggattacatttaagattactaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcccttcatagtccaccaccatctg-tttttga- |
235 |
Q |
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||||||||||||||||||||||||||||||||| ||| || | || ||||| |||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
13722 |
tggattacatttaagattactaaaagctatata--tttaagattactga---aaaaaaaacacttctcccttcatagtctaccaccatctgttttttgat |
13816 |
T |
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| Q |
236 |
tctggtagacatccctttgttgggtagagatgagatagtatctacactttgatagcagatttctg-tttttaaccttgctatcaaagtc-aaatctaaca |
333 |
Q |
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| T |
13817 |
tttggtagacatccctttgttgggtagagatgagacaatatctacacttcgatagcagtgttctgttttttaaccttgctatcaaagtcaaaatctaaca |
13916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 30598935 - 30599081
Alignment:
| Q |
7 |
agaaagatgaacaaagaataagaataaagacgaatgcaaagatggatgaagctatttcattttaataagtgattacataagttttttgggtgctatgata |
106 |
Q |
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||||||||||||||| || | ||| ||||| ||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
30598935 |
agaaagatgaacaaataaaaggaaaaaagaaaaatacaatgatggataaagctgtttcattttaataagtgattacataagttttttgggcgcaatgata |
30599034 |
T |
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| Q |
107 |
---caccatgtagtgt-aaaacatagtaaagatgttggattacattt |
149 |
Q |
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| T |
30599035 |
caccaccatgcaaagtaaaaacatagtaaagatgttggattacattt |
30599081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 30599084 - 30599120
Alignment:
| Q |
177 |
gtatcaaagactgaaaaagaacactgctcccttcata |
213 |
Q |
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| T |
30599084 |
gtatcaaagactgaaaatgaacactgctcccttcata |
30599120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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