View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9344-LTR4-TNT-insertion-1 (Length: 586)
Name: F9344-LTR4-TNT-insertion-1
Description: F9344-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9344-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 9 - 532
Target Start/End: Complemental strand, 949142 - 948619
Alignment:
| Q |
9 |
agtttacaaaactaacaaactaaattaattgtatacttaacttatgacaattaagttgaaatataattaaacttcaattatttgttaacattttttcttt |
108 |
Q |
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| T |
949142 |
agtttacaaaactaacaaactaaattaattgtatacttaacttatgacaattaagttgaaatataattaaacttcaattatttgttaacattttttcttt |
949043 |
T |
|
| Q |
109 |
gtttgtaagcagcttgttggtttattaattggtgtagttccgatatttcgcaaaatgttgattgtaaacaatgctcctcttggtgttattcaagactctc |
208 |
Q |
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| T |
949042 |
gtttgtaagcagcttgttggtttattaattggtgtagttccgatatttcgcaaaatgttgattgtaaacaatgctcctcttggtgttattcaagactctc |
948943 |
T |
|
| Q |
209 |
tagtcatggtggggtaagtattctaaaattggtcaatatatccactgcatccatattttgttattaggtaacaaaactaaaattaggttaatatacattg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
948942 |
tagtcatggtggggtaagtattctaaaattggtcaatatatccactgcatccatattttgttattaggtaacaaaactaaaattaggttaatatacattg |
948843 |
T |
|
| Q |
309 |
tcggtgtaaaaacattttacaacgtcaacaagttatatctcatattattnnnnnnnnnntgtacatgacaactttcaaaataattcattttattaatttt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
948842 |
tcggtgtaaaaacattttacaacgtcaacaagttatatctcatattattaaaaaaaaaatgtacatgacaactttcaaaataattcattttattaatttt |
948743 |
T |
|
| Q |
409 |
gatttgctgacagtgtatataaattaaactcataaaattatacttctttgatttgtagggatgcaggcattcctgcaatgaccttgttggttggagcaaa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
948742 |
gatttgctgacagtgtatataaattaaactcataaaattatacttctttgatttgtagggatgcaggcattcctgcaatgaccttgttggttggagcaaa |
948643 |
T |
|
| Q |
509 |
tcttataaagggtaattaaaagtg |
532 |
Q |
| |
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| T |
948642 |
tcttataaagggtaattaaaagtg |
948619 |
T |
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