View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9344-LTR4-TNT-insertion-3 (Length: 371)

Name: F9344-LTR4-TNT-insertion-3
Description: F9344-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9344-LTR4-TNT-insertion-3
F9344-LTR4-TNT-insertion-3
[»] chr5 (7 HSPs)
chr5 (99-362)||(29782729-29782992)
chr5 (9-82)||(1504908-1504981)
chr5 (9-82)||(1492099-1492172)
chr5 (13-82)||(1482128-1482197)
chr5 (16-82)||(1477937-1478003)
chr5 (13-82)||(1509059-1509128)
chr5 (16-82)||(1486608-1486674)
[»] chr1 (3 HSPs)
chr1 (9-82)||(44128505-44128578)
chr1 (9-82)||(44132710-44132783)
chr1 (9-82)||(44141132-44141205)
[»] chr7 (6 HSPs)
chr7 (9-82)||(5310328-5310401)
chr7 (11-82)||(46707106-46707177)
chr7 (16-82)||(5302434-5302500)
chr7 (16-82)||(5315049-5315115)
chr7 (16-82)||(5289815-5289881)
chr7 (16-82)||(5284246-5284312)
[»] chr3 (2 HSPs)
chr3 (20-82)||(37859482-37859544)
chr3 (13-68)||(37863522-37863577)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 99 - 362
Target Start/End: Complemental strand, 29782992 - 29782729
Alignment:
Q  99 taatactcatatctacaagaaccattttaactctcaatatcacacgctatatttctcaaaagaagtggagaatttcatttctaagnnnnnnnnnngggtg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          |||||    
T  29782992 taatactcatatctacaagaaccattttaactctcaatatcacacgctatatttctcagaagaagtggagaatttcatttctaagttttttttttgggtg 29782893  T
Q  199 tatataagacaagctattttaaatagtggcataagtgagtgtctataagcatttatgcacacaaaatattagttatgaaactcttannnnnnnnncaaaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  29782892 tatataagacaagctattttaaatagtggcataagtgagtgtctataagcatttatgcacacaaaatattagttatgaaactctta-ttttctttcaaaa 29782794  T
Q  299 aattgtaggatagttgaaagaaaacattctaatgtttcttcacaaat-aaactacaagatcttgg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29782793 aattgtaggatagttgaaagaaaacattctaatgtttcttcacaaataaaactacaagatcttgg 29782729  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 1504908 - 1504981
Alignment:
Q  9 agaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1504908 agaggagattttaaaagagaatcccagtgtttgtgaatacatggcaccttcattggatgctaggcaagacatgg 1504981  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 1492099 - 1492172
Alignment:
Q  9 agaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1492099 agaggagattttaaaagagaatcctaatgtttgtgaatacatggcaccttcattggatgctagacaagacatgg 1492172  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 1482128 - 1482197
Alignment:
Q  13 gagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  1482128 gagattttgaaagaaaatcctagtgtatgcgaatacatggcaccttcattggatgctaggcaagacatgg 1482197  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 1477937 - 1478003
Alignment:
Q  16 attttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||||    
T  1477937 attttgaaagaaaatccaagtgtatgtgaatacatggcaccgtcattggatgctaggcaggacatgg 1478003  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 1509059 - 1509128
Alignment:
Q  13 gagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||||||||||| | ||||||||  || | |||||| |||||||||||||||||||||||||    
T  1509059 gagattttgaaagagaatcccaatgtttgtgcttatacggcaccatcattggatgctaggcaagacatgg 1509128  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 1486608 - 1486674
Alignment:
Q  16 attttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    ||||||||||||||||||| | ||||    || ||| ||||||| ||||||||||||||||||||||    
T  1486608 attttgaaagagaatcctaatttttgcacttatatgacaccttctttggatgctaggcaagacatgg 1486674  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 44128505 - 44128578
Alignment:
Q  9 agaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44128505 agaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattggatgctaggcaagacatgg 44128578  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 44132710 - 44132783
Alignment:
Q  9 agaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44132710 agaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattggatgctaggcaagacatgg 44132783  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 44141132 - 44141205
Alignment:
Q  9 agaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44141132 agaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattggatgctaggcaagacatgg 44141205  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 5310328 - 5310401
Alignment:
Q  9 agaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  5310328 agaggagattttgaaagaaaatcctagtgtttgtgaatacatggcaccttcattggatgcaaggcaagacatgg 5310401  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 46707177 - 46707106
Alignment:
Q  11 aggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||    
T  46707177 aggagattttgaaagagaatcccagtgtttgtgaatatatggcaccttcattggatgccaggcaagacatgg 46707106  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 5302434 - 5302500
Alignment:
Q  16 attttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  5302434 attttgaaagaaaatcctagtgtttgtgaatacatggccccttcattggatgctaggcaagacatgg 5302500  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 5315049 - 5315115
Alignment:
Q  16 attttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  5315049 attttgaaagaaaatcctagtgtttgtgaatacatggccccttcattggatgctaggcaagacatgg 5315115  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 5289881 - 5289815
Alignment:
Q  16 attttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  5289881 attttgaaagaaaatccaagtgtttgtgaatacatggccccttcattggatgctaggcaagacatgg 5289815  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 5284246 - 5284312
Alignment:
Q  16 attttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    ||||||||| | ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  5284246 attttgaaaaaaaatcctagtgtttgtgaatacatggccccttcattggatgcaaggcaagacatgg 5284312  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 37859544 - 37859482
Alignment:
Q  20 tgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatgg 82  Q
    ||||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||||||    
T  37859544 tgaaagagaatccaagtgtatgcgagtacatggcaccttcattggatgcaagacaagacatgg 37859482  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 37863577 - 37863522
Alignment:
Q  13 gagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgc 68  Q
    ||||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||    
T  37863577 gagattttgaaggagaatcctagtttatgtgagtatatggcaccttcgttggatgc 37863522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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