View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9344-LTR4-TNT-insertion-4 (Length: 670)
Name: F9344-LTR4-TNT-insertion-4
Description: F9344-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9344-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 10 - 566
Target Start/End: Original strand, 46933320 - 46933876
Alignment:
| Q |
10 |
gaagagagtaccctgcccaattattttgtttttatcctattcttattgtatttccaatcgaaatcgaatctcatgtttagaacaggagcaggttaattaa |
109 |
Q |
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| T |
46933320 |
gaagagagtaccctgcccaattattttgtttttatcctattcttattgtatttccaatcgaaatcgaatctcatgtttagaacaggagcaggttaattaa |
46933419 |
T |
|
| Q |
110 |
actatttcatggacatggaaacttttttgtgtcgtcacgttttcatattcaatattatctatccaaaattcaaacttctttttcagaattactgattgat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933420 |
actatttcatggacatggaaacttttttgtgtcgtcacgttttcatattcaatattatctatccaaaattcaaacttctttttcagaattactgattgat |
46933519 |
T |
|
| Q |
210 |
ttgcttgaccgcaacagaattgatagacctaattacgtgattatatataagaatggaacatgaaattagacggggtccatctatgggtccacccttattt |
309 |
Q |
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| T |
46933520 |
ttgcttgaccgcaacagaattgatagacctaattacgtgattatatataagaatggaacatgaaattagacggggtccatctatgggtccacccttattt |
46933619 |
T |
|
| Q |
310 |
ttgcactaaaatggtataatttagtaagccaaacgtttgcactaaaatggttatcaacagcttaacttagtcttgnnnnnnngaaaacaacttagtctag |
409 |
Q |
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| T |
46933620 |
ttgcactaaaatggtataatttagtaagccaaacgtttgcactaaaatggttatcaacagcttaacttagtcttgaaaaaaagaaaacaacttagtctag |
46933719 |
T |
|
| Q |
410 |
ctaggaacaatttgagccagcaaatactttggtcaaaactcaaatcagttgaaatcaaacaatgataaactagggtaagctttactttgtaagaatattt |
509 |
Q |
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| T |
46933720 |
ctaggaacaatttgagccagcaaatactttggtcaaaactcaaatcagttgaaatcaaacaatgataaactagggtaagctttactttgtaagaatattt |
46933819 |
T |
|
| Q |
510 |
tgtatttttattttgaaagtgtgtaataattttagttgttcataaaatgaacaattg |
566 |
Q |
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| T |
46933820 |
tgtatttttattttgaaagtgtgtaataattttagttgttcataaaatgaacaattg |
46933876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 584 - 661
Target Start/End: Original strand, 26967116 - 26967193
Alignment:
| Q |
584 |
ggtcttcaaaaagctcttgctcttcatgcctaaagtcatgtgatgtatttacaacaggagggaatacaggttcaattg |
661 |
Q |
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| T |
26967116 |
ggtcttcaaaaagctcttgctcttcatgcctaaagtcatgtgatgtatttacaacaggagggaatacaggttcaattg |
26967193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 633
Target Start/End: Original strand, 27023601 - 27023650
Alignment:
| Q |
584 |
ggtcttcaaaaagctcttgctcttcatgcctaaagtcatgtgatgtattt |
633 |
Q |
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||||||||||||||||||| || ||||| ||||| ||||||||||||||| |
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| T |
27023601 |
ggtcttcaaaaagctcttgatcatcatgtctaaaatcatgtgatgtattt |
27023650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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