View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9344-LTR4-TNT-insertion-5 (Length: 486)
Name: F9344-LTR4-TNT-insertion-5
Description: F9344-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9344-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Complemental strand, 7200422 - 7199956
Alignment:
| Q |
10 |
atatttatatatttaatgggaatggagatgaccttattcagtttagcaattaaaatatgttagaaagatgaaagtagcattaattgtagttttccgctag |
109 |
Q |
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| T |
7200422 |
atatttatatatttaatgggaatggagatgaccttattcagtttagcaattaaaatatgttagaaagatgaaagtagcattaattgtagttttccgctag |
7200323 |
T |
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| Q |
110 |
ccgctttaatagcggaaactttgggttgcctatgttgtagtctgcagcaccttcattctgttgggaatgacggtttgtgtttagtcccacgttgtctaaa |
209 |
Q |
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| T |
7200322 |
ccgctttaatagcggaaactttgggttgcctatgttgtagtctgcagcaccttcattctgttgggaatgacggtttgtgtttagtcccacgttgtctaaa |
7200223 |
T |
|
| Q |
210 |
gatatgacatatgtagttctcatatcctaaccactgtgtatgatctatcatcttttcatggctccgacccaccttgaggtttcaggagagtattagagtc |
309 |
Q |
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| T |
7200222 |
gatatgacatatgtagttctcatatcctaaccactgtgtatgatctatcatcttttcatggctccgacccaccttgaggtttcaggagagtattagagtc |
7200123 |
T |
|
| Q |
310 |
tacttactcgggtttataagtttattgtaactgtatctgatcacacagatctagctgaacagttgctattatcttcgtccgtcaacttctataaatagtt |
409 |
Q |
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| T |
7200122 |
tacttactcgggtttataagtttattgtaactgtatctgatcacacagatctagctgaacagttgctattatcttcgtccgtcaacttctataaatagtt |
7200023 |
T |
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| Q |
410 |
gcgacctcccttgcatctgaatcagttcatttttcaactttaataatatcagttcctctcgagaatt |
476 |
Q |
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| T |
7200022 |
gcgacctcccttgcatctgaatcagttcatttttcaactttaataatatcagttcctctcgagaatt |
7199956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 244 - 415
Target Start/End: Complemental strand, 7206856 - 7206677
Alignment:
| Q |
244 |
tgtgtatgatctatcatcttttcatggctccgacccaccttgaggtttcaggagagtattagagtctacttactcgggtttataagtttattgtaactgt |
343 |
Q |
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| T |
7206856 |
tgtgtatgatctatcatcttttcatggctccgacccaccttgagcttgtaggagagtattagagtatacttactcgggtttataagtttactgtaactgt |
7206757 |
T |
|
| Q |
344 |
atctgatc--------acacagatctagctgaacagttgctattatcttcgtccgtcaacttctataaatagttgcgacc |
415 |
Q |
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| T |
7206756 |
atctaatctctatagtacacagaactagctgaacagttgctattatcttcgtcggtcgacttctatatatagttgcgacc |
7206677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 7206979 - 7206906
Alignment:
| Q |
10 |
atatttatatatttaatgggaatggagatgaccttattcagtttagcaattaaaatatgttagaaagatgaaag |
83 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |
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| T |
7206979 |
atatttatgtatttaatgggaatggagatgacattattcagtttagcaattaaaatatgttaaaaagctgaaag |
7206906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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