View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9345-LTR4-TNT-insertion-1 (Length: 197)
Name: F9345-LTR4-TNT-insertion-1
Description: F9345-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9345-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 16811052 - 16811232
Alignment:
| Q |
7 |
aattagaagaactgcgtgcattaaaagttggaccatcaaatacaactcaatcatctaaagctgcaaattggaccatttgttcatcatgcaagaaaatatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16811052 |
aattagaagaactgcgtgcattaaaagttggaccatcaaatacaactcaatcatctaaagctgcaaattggaccatttgttcatcatgcaagaaaatatg |
16811151 |
T |
|
| Q |
107 |
gaaacccaatgaggaagatgttgttattaagagcagccacagcaccatagagttagattaaagtctataagaatttaatta |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16811152 |
gaaacccaatgaggaagatgttgttattaagagcagccacagcaccatagagttagattaaagtctataagaatttaatta |
16811232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 16850331 - 16850511
Alignment:
| Q |
7 |
aattagaagaactgcgtgcattaaaagttggaccatcaaatacaactcaatcatctaaagctgcaaattggaccatttgttcatcatgcaagaaaatatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16850331 |
aattagaagaactgcgtgcattaaaagttggaccatcaaatacaactcaatcatctaaagctgcaaattggaccatttgttcatcatgcaagaaaatatg |
16850430 |
T |
|
| Q |
107 |
gaaacccaatgaggaagatgttgttattaagagcagccacagcaccatagagttagattaaagtctataagaatttaatta |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16850431 |
gaaacccaatgaggaagatgttgttattaagagcagccacagcaccatagagttagattaaagtctataagaatttaatta |
16850511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 309 times since January 2019
Visitors: 965