View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9345-LTR4-TNT-insertion-2 (Length: 636)
Name: F9345-LTR4-TNT-insertion-2
Description: F9345-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9345-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 12 - 628
Target Start/End: Complemental strand, 5381702 - 5381086
Alignment:
| Q |
12 |
gattacgtaaagattaacatgattagatagagtagtcactagtttctctattaacagtgaacatgaccattgtaattgttaagtgagaatcataatacat |
111 |
Q |
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| T |
5381702 |
gattacgtaaagattaacatgattagatagagtagtcactagtttctctattaacagtgaacatgaccattgtaattgttaagtgagaatcataatacat |
5381603 |
T |
|
| Q |
112 |
ttgatcattttctctccattttcttgctaattttgtgttctcaatcagtatcttaataaatattctttgaatcaaattaatcatgtaacggatagtactt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5381602 |
ttgatcattttctctccattttcttgctaattttgtgttctcaatcagtatcttaataaatattctttgaatcaaattaatcatgtaacggatagtactt |
5381503 |
T |
|
| Q |
212 |
tctatcaattaaataaatnnnnnnntgtattttcaatttgaagcgtctaatcccaaagtttctaacaaatgtgttgtcattgtttcaataataatattgc |
311 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5381502 |
tctatcaattaaataaataaaaaaatgtattttcaatttgaagcgtctaatcccaaagtttctaacaaatgtgttgtcattgtttcaataataatattgc |
5381403 |
T |
|
| Q |
312 |
aacatgcatgatgtgaaaaagaagggacgaatacaaatgatatgataatatcattagccttaataatatcatgttctttttaccacaatttgcttaattt |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5381402 |
aacatgcatgatgtgaaaaagaagggacgaatacaaatgatatgataatatcattagccttaataatatcatgttctttttaccacaatttgcttaattt |
5381303 |
T |
|
| Q |
412 |
gcttagctttttgtttattattcttatgtagcgaggtagaagtctcacattgtatgaaaatgtgaaactggagcaatatataagtgagatgtcccataaa |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5381302 |
gcttagctttttgtttattattcttatgtagcgaggtagaagtctcacattgtatgaaaatgtgaaactggagcaatatataagtgagatgtcccataaa |
5381203 |
T |
|
| Q |
512 |
ttcaacaaggttttaggttgtaatgttttgtccaactcagttacttttagttgaatgtgaaagaactaattacaagaacacaagatcaatgcagtgtatg |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5381202 |
ttcaacaaggttttaggttgtaatgttttgtccaactcagttacttttagttgaatgtgaaagaactaattacaagaacacaagatcaatgcagtgtatg |
5381103 |
T |
|
| Q |
612 |
caataactaactgaatt |
628 |
Q |
| |
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||||||||||||||||| |
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| T |
5381102 |
caataactaactgaatt |
5381086 |
T |
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