View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9345-LTR4-TNT-insertion-4 (Length: 74)
Name: F9345-LTR4-TNT-insertion-4
Description: F9345-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9345-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 59; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 43341704 - 43341762
Alignment:
| Q |
9 |
tcatcatatttaactatatttgttactcatcgaagccgtccgatctaaatcagcaattg |
67 |
Q |
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| T |
43341704 |
tcatcatatttaactatatttgttactcatcgaagccgtccgatctaaatcagcaattg |
43341762 |
T |
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