View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9345-LTR4-TNT-insertion-6 (Length: 291)

Name: F9345-LTR4-TNT-insertion-6
Description: F9345-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9345-LTR4-TNT-insertion-6
F9345-LTR4-TNT-insertion-6
[»] chr5 (4 HSPs)
chr5 (7-225)||(31070514-31070732)
chr5 (247-291)||(31070755-31070799)
chr5 (7-43)||(3524269-3524305)
chr5 (7-51)||(26817150-26817194)
[»] chr2 (4 HSPs)
chr2 (7-51)||(41193352-41193396)
chr2 (7-42)||(31366620-31366655)
chr2 (7-43)||(2152951-2152987)
chr2 (7-43)||(12840815-12840851)
[»] chr3 (2 HSPs)
chr3 (10-48)||(44772758-44772796)
chr3 (7-51)||(10221792-10221836)
[»] chr8 (4 HSPs)
chr8 (7-51)||(14338404-14338448)
chr8 (7-51)||(33690379-33690423)
chr8 (7-41)||(10904479-10904513)
chr8 (7-43)||(34361811-34361847)
[»] chr4 (2 HSPs)
chr4 (7-51)||(46173222-46173266)
chr4 (7-41)||(6583954-6583988)
[»] chr1 (6 HSPs)
chr1 (7-43)||(27841503-27841539)
chr1 (7-43)||(32715484-32715520)
chr1 (7-43)||(34394756-34394792)
chr1 (7-49)||(22872805-22872847)
chr1 (7-43)||(8066732-8066768)
chr1 (7-43)||(24187820-24187856)
[»] chr6 (2 HSPs)
chr6 (7-42)||(33703844-33703879)
chr6 (7-43)||(27597403-27597439)
[»] scaffold0488 (1 HSPs)
scaffold0488 (7-43)||(6091-6127)
[»] chr7 (2 HSPs)
chr7 (7-43)||(28683145-28683181)
chr7 (7-43)||(33380918-33380954)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 31070514 - 31070732
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcgattcatggnnnnnnncccacccctaactgccacaattgcactggaatacaaaccttgatattg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31070514 accattataatgattcggttatttttggttcggttcgattcatggtttttttcccacccctaactgccacaattgcactggaatacaaaccttgatattg 31070613  T
Q  107 ctgcttgatagttcccagggtttgagttgaactgaaatattggtgatctcttacattttgatgtataaaatatataagtttgtgtctgaatttggttttt 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  31070614 ctgcttgatagttcccagggtttgagttgaactgaagtattggtgatctcttacattttgatgtataagatatataagtttgtgtctgagtttggttttt 31070713  T
Q  207 caaaatattatgcaatcta 225  Q
    || ||||||||||||||||    
T  31070714 cagaatattatgcaatcta 31070732  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 31070755 - 31070799
Alignment:
Q  247 acgcaagttatgcaatttttgagaatttatgtaaatattgatctg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31070755 acgcaagttatgcaatttttgagaatttatgtaaatattgatctg 31070799  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 3524269 - 3524305
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  3524269 accattataatgattcggttatttttggttcggttcg 3524305  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 26817194 - 26817150
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcgattcatgg 51  Q
    |||||||||||| ||||||| ||||| |||||||||| |||||||    
T  26817194 accattataatggttcggttgttttttgttcggttcggttcatgg 26817150  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 41193396 - 41193352
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcgattcatgg 51  Q
    |||||||||||| |||||||||||||||||||||||| |||||||    
T  41193396 accattataatggttcggttatttttggttcggttcggttcatgg 41193352  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 31366620 - 31366655
Alignment:
Q  7 accattataatgattcggttatttttggttcggttc 42  Q
    |||||||||||| |||||||||||||||||||||||    
T  31366620 accattataatggttcggttatttttggttcggttc 31366655  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 2152987 - 2152951
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  2152987 accattataatggttcggttatttttggttcgattcg 2152951  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 12840815 - 12840851
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  12840815 accattataataattcggttatttttggttcgattcg 12840851  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 44772796 - 44772758
Alignment:
Q  10 attataatgattcggttatttttggttcggttcgattca 48  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  44772796 attataatgattcggttatttttggttcggttcggttca 44772758  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 10221836 - 10221792
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcgattcatgg 51  Q
    |||||||||||| ||||||| ||||| |||||||||| |||||||    
T  10221836 accattataatggttcggttgttttttgttcggttcggttcatgg 10221792  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 14338404 - 14338448
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcgattcatgg 51  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||    
T  14338404 accattataatggttcgattatttttggttcggttcggttcatgg 14338448  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 33690423 - 33690379
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcgattcatgg 51  Q
    |||||||||||| ||||||||||||||||| |||||| |||||||    
T  33690423 accattataatggttcggttatttttggtttggttcggttcatgg 33690379  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 10904479 - 10904513
Alignment:
Q  7 accattataatgattcggttatttttggttcggtt 41  Q
    |||||||||||| ||||||||||||||||||||||    
T  10904479 accattataatggttcggttatttttggttcggtt 10904513  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 34361811 - 34361847
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||  ||||||||||||||||||||||||    
T  34361811 accattataatagttcggttatttttggttcggttcg 34361847  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 46173222 - 46173266
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcgattcatgg 51  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||    
T  46173222 accattataatgatttggttatttttgattcggttcggttcatgg 46173266  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 6583954 - 6583988
Alignment:
Q  7 accattataatgattcggttatttttggttcggtt 41  Q
    |||||||||||| ||||||||||||||||||||||    
T  6583954 accattataatggttcggttatttttggttcggtt 6583988  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 27841539 - 27841503
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27841539 accattataatggttcggttatttttggttcggttcg 27841503  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 32715484 - 32715520
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32715484 accattataatggttcggttatttttggttcggttcg 32715520  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 34394756 - 34394792
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| ||||||||||||||||||||||||    
T  34394756 accattataatggttcggttatttttggttcggttcg 34394792  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 22872805 - 22872847
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcgattcat 49  Q
    |||||||||||| ||||||||||||| |||||||||| |||||    
T  22872805 accattataatggttcggttattttttgttcggttcggttcat 22872847  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 8066732 - 8066768
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  8066732 accattataatggttcggttatttttagttcggttcg 8066768  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 24187820 - 24187856
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  24187820 accattataatggttcagttatttttggttcggttcg 24187856  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 33703844 - 33703879
Alignment:
Q  7 accattataatgattcggttatttttggttcggttc 42  Q
    |||||||||||| |||||||||||||||||||||||    
T  33703844 accattataatggttcggttatttttggttcggttc 33703879  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 27597403 - 27597439
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| |||||||||||||||||| |||||    
T  27597403 accattataatggttcggttatttttggttcagttcg 27597439  T

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Target: scaffold0488 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 6127 - 6091
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| |||||||||||||||||| |||||    
T  6127 accattataatggttcggttatttttggttcagttcg 6091  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 28683145 - 28683181
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  28683145 accattaaaatggttcggttatttttggttcggttcg 28683181  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 33380954 - 33380918
Alignment:
Q  7 accattataatgattcggttatttttggttcggttcg 43  Q
    |||||||||||| || |||||||||||||||||||||    
T  33380954 accattataatggtttggttatttttggttcggttcg 33380918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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