View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9345-LTR4-TNT-insertion-7 (Length: 368)
Name: F9345-LTR4-TNT-insertion-7
Description: F9345-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9345-LTR4-TNT-insertion-7 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 28 - 358
Target Start/End: Original strand, 5986995 - 5987325
Alignment:
| Q |
28 |
aaaaacatagaaaaatatgcannnnnnngttgaccaagatgaaacaattaggcatcttctttgtgaatgtgaattgattagggagttttgaggtctccct |
127 |
Q |
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| T |
5986995 |
aaaaacatagaaaaatatgcatttttttgttgaccaagatgaaacaattaggcatcttctttgtgaatgtgaattgattagggagttttgaggtctccct |
5987094 |
T |
|
| Q |
128 |
tggtttaaagatcgcaagaattttatcaatatcatcccttttcattgaagcaaattcttcggttgttatcctaatgagaaatggtaatacctcaattgtt |
227 |
Q |
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| T |
5987095 |
tggtttaaagatcgcaagaattttatcaatatcatcccttttcattgaagtaaattcttcggttgttatcctaatgagaaatggtaatacctcaattgtt |
5987194 |
T |
|
| Q |
228 |
tttctccaacctattttcgatgataaaccatatggtcacaacgacttctttgactgtacgaaattcgtaacactctcaacctcccatattggaacatgca |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5987195 |
tttctccaacctattttcgatgataaaccatatggtcacaacgacttctttgactgtacgaaattcgtaacactctcaacctcccatattggaacatgca |
5987294 |
T |
|
| Q |
328 |
tgtatcttatatttatttatagaggttatta |
358 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
5987295 |
tgtatcttatatttatttatagaggttatta |
5987325 |
T |
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