View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9347-LTR4-TNT-insertion-1 (Length: 197)
Name: F9347-LTR4-TNT-insertion-1
Description: F9347-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9347-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 25185700 - 25185573
Alignment:
| Q |
8 |
gatctagggcatggaaattggctaacccggaaggtcttttgctacaacaaccgaaacatgaaatctcactttcatagttaattgttatagacaacatatg |
107 |
Q |
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| T |
25185700 |
gatctagggcatggaaattggctaacccggaaggtcttttgctacaacaaccgaaacatgaaatctcactttcatagttaattgttatagacaacatatg |
25185601 |
T |
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| Q |
108 |
taaatatcgtagaggaaaagatagtgtg |
135 |
Q |
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| T |
25185600 |
taaatatcgtagaggaaaagatagtgtg |
25185573 |
T |
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