View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9347-LTR4-TNT-insertion-1 (Length: 197)
Name: F9347-LTR4-TNT-insertion-1
Description: F9347-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9347-LTR4-TNT-insertion-1
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 25185700 - 25185573
Alignment:
Q
8
gatctagggcatggaaattggctaacccggaaggtcttttgctacaacaaccgaaacatgaaatctcactttcatagttaattgttatagacaacatatg
107
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
25185700
gatctagggcatggaaattggctaacccggaaggtcttttgctacaacaaccgaaacatgaaatctcactttcatagttaattgttatagacaacatatg
25185601
T
Q
108
taaatatcgtagaggaaaagatagtgtg
135
Q
||||||||||||||||||||||||||||
T
25185600
taaatatcgtagaggaaaagatagtgtg
25185573
T
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