View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9347-LTR4-TNT-insertion-2 (Length: 138)
Name: F9347-LTR4-TNT-insertion-2
Description: F9347-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9347-LTR4-TNT-insertion-2
Alignment Details
Target: chr3 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 51366399 - 51366518
Alignment:
Q
9
tcataacatggaaggaaagtggaccactatagaaagtttgtggtctggcctggttgagaatacccccaacctatactcatacttttacttaatagttgga
108
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
51366399
tcataacatggaaggaaagtggaccactatagaaagtttgtggtctggcctggttgagaatatccccaacctatactcatacttttacttaatagttgga
51366498
T
Q
109
ttgtgttttgtacttaatta
128
Q
||||||||||||||||||||
T
51366499
ttgtgttttgtacttaatta
51366518
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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