View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9347-LTR4-TNT-insertion-2 (Length: 138)
Name: F9347-LTR4-TNT-insertion-2
Description: F9347-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9347-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 51366399 - 51366518
Alignment:
| Q |
9 |
tcataacatggaaggaaagtggaccactatagaaagtttgtggtctggcctggttgagaatacccccaacctatactcatacttttacttaatagttgga |
108 |
Q |
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| T |
51366399 |
tcataacatggaaggaaagtggaccactatagaaagtttgtggtctggcctggttgagaatatccccaacctatactcatacttttacttaatagttgga |
51366498 |
T |
|
| Q |
109 |
ttgtgttttgtacttaatta |
128 |
Q |
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|||||||||||||||||||| |
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| T |
51366499 |
ttgtgttttgtacttaatta |
51366518 |
T |
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