View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9348-LTR4-TNT-insertion-2 (Length: 54)
Name: F9348-LTR4-TNT-insertion-2
Description: F9348-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9348-LTR4-TNT-insertion-2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 32; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 53854931 - 53854896
Alignment:
| Q |
10 |
tggaagggtaaatgttatgaggaaatggaataattg |
45 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
53854931 |
tggaagagtaaatgttatgaggaaatggaataattg |
53854896 |
T |
|
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