View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9348-LTR4-TNT-insertion-3 (Length: 287)
Name: F9348-LTR4-TNT-insertion-3
Description: F9348-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9348-LTR4-TNT-insertion-3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 43878822 - 43878553
Alignment:
| Q |
9 |
ctacttctacctaagaatggattgaaggaaagagatctaggtagtttttgacaccctccaaagatgaaacatttgaagtttttgagtgnnnnnnnaagta |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43878822 |
ctacttctacctaagaatggattgaaggaaagagatctaggtagtttttgataccctccaaagatgaaacatttgaagtttttgagtgtttttttaagta |
43878723 |
T |
|
| Q |
109 |
aaaatctggtcttgcaaatggtttttcttagaagcatttgtggttctggtctgatgtgatgattgaagagaggttttcttgtgtattctccaattttgtc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43878722 |
aaaatctggtcttgcaaatggtttttcttagaagcatttgtggttctggtctgatgtgatgattgaagagaggttttcttgtgtattctccaattttgtc |
43878623 |
T |
|
| Q |
209 |
ctcacttagacttgtatatatataaagagatgttcactattcctaaggttaccaaaagaaaaatcaattg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43878622 |
ctcacttagacttgtatatatataaagagatgttcactattcctaaggttaccaaaagaaaaatcaattg |
43878553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 348 times since January 2019
Visitors: 967