View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9349-LTR4-TNT-insertion-1 (Length: 222)
Name: F9349-LTR4-TNT-insertion-1
Description: F9349-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9349-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 5983548 - 5983342
Alignment:
| Q |
7 |
acaaagactagatcaagttcttacaccgaaaggtgaccagagagacagagagatctaacaagaacaaagttagaagcagcaatcagcagtgcacaaacta |
106 |
Q |
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| T |
5983548 |
acaaagactagatcaagttcttacaccgaaaggtgaccagagagacagagagatctaacaagaacaaagttagaagcagcaatcagcagtgcacaaacta |
5983449 |
T |
|
| Q |
107 |
tttgagagcatcacatgttaaggaccttcaagagtaaatcaaaatagaagagttatatatgaatttgtaaaaatcggaacatctcaagggataatctgga |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5983448 |
tttgagagcatcacatgttaaggaccttcaagagtaaatcaaaatagaagagttatatatgaatttgtaaaaatcggaacatctcaagggataatctgga |
5983349 |
T |
|
| Q |
207 |
acaattg |
213 |
Q |
| |
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||||||| |
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| T |
5983348 |
acaattg |
5983342 |
T |
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