View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9349-LTR4-TNT-insertion-2 (Length: 105)
Name: F9349-LTR4-TNT-insertion-2
Description: F9349-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9349-LTR4-TNT-insertion-2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 85; Significance: 5e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 5563334 - 5563246
Alignment:
| Q |
9 |
caaacacatctgatagaagatgtgttacgcatgccggtgttgtccgcgtccaacactggcacgaacatatgattatattcaattgatta |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5563334 |
caaacacatctgatagaagatgtgttacgcatgccggtgttgtccgcgtccaacactggcacgaacatatgattacattcaattgatta |
5563246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 429 times since January 2019
Visitors: 974