View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9350-LTR4-TNT-insertion-1 (Length: 697)
Name: F9350-LTR4-TNT-insertion-1
Description: F9350-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9350-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 581; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 7 - 668
Target Start/End: Complemental strand, 28961884 - 28961223
Alignment:
| Q |
7 |
aatgaggacaagttttgcaacgcatataggcgtttccattctgcttgatttttgtgaagacgggttttgaaaaagatccattttgatgaattttaacagt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28961884 |
aatgaggacaagttttgcaacgcatataggcgtttccattctgcttgatttttgtgaagatgggttttgaaaaagatccattttgatgaattttaacagt |
28961785 |
T |
|
| Q |
107 |
tatattactagactcttgagaaaactcacaattgatactagaaaaggaaaggtaaaatggtcaagaaattgagtttctagggaaggaagttgtttatcaa |
206 |
Q |
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| T |
28961784 |
tatattactagactcttgagaaaactcacaattgatactagaaaaggaaaggtaaaatggtcaagaaattgagtttctagggaaggaagttgtttatcaa |
28961685 |
T |
|
| Q |
207 |
ccaagtatcatgtgttgaaaagaatgataagagaacagaaaattaaaagagagactaattaggaaattgttgttcagaaatcggacgcgaactaaatttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28961684 |
ccaagtatcatgtgttgaaaagaatgataagagaacagaaaattaaaagagagactaattaggaaattgttgttcagaaatcggacgcgaactaaatttt |
28961585 |
T |
|
| Q |
307 |
agactgagttgcggactaggtcgtacagttcagctaaaggcttctaagttttgatactgaatatcaaattagaaggtttggtttttatagaagagagaga |
406 |
Q |
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| T |
28961584 |
agactgagttgcggactaggtcgtacagttcagctaaaggcttctaagttttgatactgaatatcaaattagaaggtttggtttttatagaagagagaga |
28961485 |
T |
|
| Q |
407 |
ataagaaacttgtgaagataaggttaggattattgaatnnnnnnnnggagagaaaacaagtgaaagatataaggnnnnnnnnnnnnnnnaaggtagagat |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
28961484 |
ataagaaacttgtgaagataaggttaggattattgaataaaaaaaaggagagaaaacaagtgaaagatataaggttttttcttttttttaaggtagagat |
28961385 |
T |
|
| Q |
507 |
agctttcaagtaccaatactttcaggtgctgcggctagaatgagatagagttaacataaattccataaatattgggaagggtgggtggtttatggagtat |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28961384 |
agctttcaagtaccaatactttcaggtgctgcggttagaatgagatagagttaacataaattccataaatattgggaagggtgggtggtttatggagtat |
28961285 |
T |
|
| Q |
607 |
agagaggaccacatgggtcaagaagactccctcagatggggatttgaatgaagaacttacca |
668 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28961284 |
agagaggaccacatgggtcaagaagactccctcagatggggattttaatgaagaacttacca |
28961223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 507 - 661
Target Start/End: Complemental strand, 29001078 - 29000924
Alignment:
| Q |
507 |
agctttcaagtaccaatactttcaggtgctgcggctagaatgagatagagttaacataaattccataaatattgggaagggtgggtggtttatggagtat |
606 |
Q |
| |
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||||||||||||| | | |||||||||||| || ||||||||||||||| || | |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29001078 |
agctttcaagtactagtgttttcaggtgctgtggttagaatgagatagagccaagaaaaattccataaatattgggaagggtgggtggtttatagagtat |
29000979 |
T |
|
| Q |
607 |
agagaggaccacatgggtcaagaagactccctcagatggggatttgaatgaagaa |
661 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
29000978 |
agagaggaccacatgagtcaagaagactccctcaagtggggatttgaatgaagaa |
29000924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 29001537 - 29001488
Alignment:
| Q |
41 |
tccattctgcttgatttttgtgaagacgggttttgaaaaagatccatttt |
90 |
Q |
| |
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||||||||| |||||||| | ||||| |||||| |||||||||||||||| |
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| T |
29001537 |
tccattctgtttgattttagagaagatgggtttcgaaaaagatccatttt |
29001488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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